PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO86015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 744aa MW: 81650 Da PI: 5.8038 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.9 | 2.8e-21 | 57 | 112 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k OMO86015 57 KKKYHRHTPNQIQELESFFKECPHPDEKQRMELSRRLGLESKQIKFWFQNRRTQMK 112 79999************************************************999 PP | |||||||
2 | START | 183.9 | 8.9e-58 | 260 | 477 | 3 | 204 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT..... CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg..... 88 a++a++el+k+a+ +ep+W k e +n++e++++f+ k +++ea r++g+v lve+l+d++ +W e+++ ka++++v+ssg OMO86015 260 ALAAMDELIKMAQMDEPLWIKGLdgglETLNYEEYRRTFSGMKPngYTTEATRETGLVCLRGLALVETLMDVN-RWAEMFPsmisKAAIVDVLSSGtgvpr 359 689************************************77766999**************************.*************************** PP .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS START 89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187 + lq+m ae+q+lsplvp R + f+R+++q+++++w++vdvS+d++q+ + + + +++lpSg+li++++n +skvtwveh++++++++h llr+l+++ OMO86015 360 dNSLQVMDAEFQVLSPLVPiRQVRFLRFCKQHSEHVWAVVDVSIDPCQDAANAHIFPNCRRLPSGCLIQDMDNKYSKVTWVEHTEYDDNVVHPLLRPLLST 460 **************************************************9999999******************************************** PP HHHHHHHHHHHHTXXXX CS START 188 glaegaktwvatlqrqc 204 g +ga +w+atlqrq OMO86015 461 GFGFGAHRWLATLQRQS 477 **************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 744 aa Download sequence |
MDGPSELGMI GENFDPGLGV RMREDGYESR SGSDNFEGAS GDDQDAAAAD GPAAKKKKKY 60 HRHTPNQIQE LESFFKECPH PDEKQRMELS RRLGLESKQI KFWFQNRRTQ MKTQLERHEN 120 IMLRQDNDKL RAENDLLKQA MSSPICNNCG GPAVAGEISY EQHQLRIENA RLKEELNRIC 180 ALTNKFLGRP LSSSASPIPS QGINSNLELA VGRNGFGGLT NAGTTLPMGY DFGDGAMVPS 240 MKPMVSELPP YDRSAFVDAA LAAMDELIKM AQMDEPLWIK GLDGGLETLN YEEYRRTFSG 300 MKPNGYTTEA TRETGLVCLR GLALVETLMD VNRWAEMFPS MISKAAIVDV LSSGTGVPRD 360 NSLQVMDAEF QVLSPLVPIR QVRFLRFCKQ HSEHVWAVVD VSIDPCQDAA NAHIFPNCRR 420 LPSGCLIQDM DNKYSKVTWV EHTEYDDNVV HPLLRPLLST GFGFGAHRWL ATLQRQSDCL 480 AVLLCPDMPG EDSTGITSAG RKSMIKLAQR MTRNFCSGVC ASSIHRWEKV NIGSLGDDVR 540 VMTRKNVSDP GEPPGVVLSA TTSVWMPVTQ QRLFDFLRNE RMRSEWDILS NGGPMQEMVN 600 VAKGQGHGNC VSLLRGSAMN ASENNMLILQ ETWCDSSGAL VVYAPVDVSS MNLVMNGGDT 660 TYVALLPSGF AILPGISPSF HGAQPNGALL KPDSDGSGGC ILTVGFQILV NSLPSAKLTM 720 ESVDTVNNLL ACTIQKIKAA LTAT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO86015 |