PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86001

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARR-B

Protein Properties

Length: 1199aa MW: 131870 Da PI: 9.4701

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86001	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74	2.1e-23	228	281	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+++ Wt++LH++F++a++++ G +kA+Pk+ile+m+ +g+t+e+v+SHLQkYR+ OMO86001 228 KAKVIWTNTLHNQFLDALRRI-GMDKAVPKKILEHMNTPGITRENVASHLQKYRM 281 67999**************.******************************7 PP
2	Myb_DNA-binding	30.4	8.9e-10	233	280	4	48
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT ++ +++da ++ G++ +k+I ++m+ g t++++ s++qky+ OMO86001 233 WTNTLHNQFLDALRRIGMDkaVPKKILEHMNtPGITRENVASHLQKYR 280 ***********************************************7 PP
3	Response_reg	89.2	1.1e-29	26	135	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l+vdD+ + + ++ +l++ +y eva+a+++ eal +l+++ +Dl+++D+ mp+m+G+el ++i++e+p++p+i++++ ++e+ +l+ l Ga OMO86001 26 ILVVDDDATSLAIVSAMLREWRY-EVATAQSPIEALSILRARPghFDLVVTDLHMPEMNGIELQQQINRESPDIPVIIMSSDDQESVMLHSLACGAV 121 89*******************.***********877777************************************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 +++Kp++pe+l + OMO86001 122 FYIVKPVNPEDLKN 135 *********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1199 aa Download sequence
MGSHEKSQES SSNNHPNPSV FMNISILVVD DDATSLAIVS AMLREWRYEV ATAQSPIEAL 60 SILRARPGHF DLVVTDLHMP EMNGIELQQQ INRESPDIPV IIMSSDDQES VMLHSLACGA 120 VFYIVKPVNP EDLKNVWQYA IAARKGKQVV VEDVGSIQFE QGESSSSAGK KSTRRPRRSL 180 PPGNGTDHHD KNKDKEKDKD KRGAKRKAPR NNDDDDDDDD ETGSAPKKAK VIWTNTLHNQ 240 FLDALRRIGM DKAVPKKILE HMNTPGITRE NVASHLQKYR MFLKRVAERT NYSSKAFVER 300 VLRSSFAAGH PTLLQAAEEY ARLEELQRLR GLTFHPGYGG TALSPHHRNA NAANNGSMLF 360 GNQNNIASSS NSSRHQHGYG QSRLLGRQAT TNNRRSVSGN SQGNRVGYAN GSNISSLNGG 420 NFSGNGLMNG ANPMQSYQNQ FQSFPNYYND AGASSSVFRF GANNNYSSNP NMQGTGNFGT 480 FTFGATPYPT LNTGSTPNNN NGYVGFNGMG QSQTLFGNGG YSSMNGPFNY GNVNVAAMGN 540 QTFNPMAQGS GSSSFGSYGS NQASPTYAAA NQQTNTSMFP SLANNGGASL YNSVNLMNNN 600 GGPSQYQNSV QQMNNASSSS FDNIIGDGYL SDLLLESRNN QLQQTGENGV QNPELSSSST 660 FPDIYPTLED LLNIEFLESL SLEETSPRTR RNQTTSAQAR QQSEVEQLAD SDLSNLFQMN 720 NASSSGYAPA AASGSASGND PLNNQACLPS VKIGETSISS IPCSALTAQV HDLQALQFEP 780 QSDGLNNFLQ EQYYLDNVAV ADLDFSNQGK MRPIFCGNFE YDARQSDLER LFRKYGKVER 840 VDMKSGFAFI YMEDERDADD AIRALDRTEF GRKGRRLRVE WTKHERGIRR PGGSGGGGGG 900 SSGGGGGSRR SSTNSRPSKT LFVINFDPYS TRTRDLERHF ESYGKIVSVR IRRNFAFVQY 960 DSQDDATRAL EATNMSKLMD RVISVEYAVR DDDDRRNGYS PERGRDRSPE RGRDRRRSPS 1020 PYRRERGSPD YGRGSSRSPY NRKERASPDY GRGRSPSPYK RRDRASPEYG RPTSRSRSPH 1080 RRDRAGTDNA RGSSRSPYRK DKASPENGRG PSRSPYRREK CSAENDRSPS QSPYKRERPS 1140 SDNGRGPSHS PYGRDRASPE NGRGTSPGPV PDGRDSPYGG GAESPVNERY GSQSPAGEE

Sequence ? help Back to Top

Protein Sequence Length: 1199 aa Download sequence

MGSHEKSQES SSNNHPNPSV FMNISILVVD DDATSLAIVS AMLREWRYEV ATAQSPIEAL  60
SILRARPGHF DLVVTDLHMP EMNGIELQQQ INRESPDIPV IIMSSDDQES VMLHSLACGA  120
VFYIVKPVNP EDLKNVWQYA IAARKGKQVV VEDVGSIQFE QGESSSSAGK KSTRRPRRSL  180
PPGNGTDHHD KNKDKEKDKD KRGAKRKAPR NNDDDDDDDD ETGSAPKKAK VIWTNTLHNQ  240
FLDALRRIGM DKAVPKKILE HMNTPGITRE NVASHLQKYR MFLKRVAERT NYSSKAFVER  300
VLRSSFAAGH PTLLQAAEEY ARLEELQRLR GLTFHPGYGG TALSPHHRNA NAANNGSMLF  360
GNQNNIASSS NSSRHQHGYG QSRLLGRQAT TNNRRSVSGN SQGNRVGYAN GSNISSLNGG  420
NFSGNGLMNG ANPMQSYQNQ FQSFPNYYND AGASSSVFRF GANNNYSSNP NMQGTGNFGT  480
FTFGATPYPT LNTGSTPNNN NGYVGFNGMG QSQTLFGNGG YSSMNGPFNY GNVNVAAMGN  540
QTFNPMAQGS GSSSFGSYGS NQASPTYAAA NQQTNTSMFP SLANNGGASL YNSVNLMNNN  600
GGPSQYQNSV QQMNNASSSS FDNIIGDGYL SDLLLESRNN QLQQTGENGV QNPELSSSST  660
FPDIYPTLED LLNIEFLESL SLEETSPRTR RNQTTSAQAR QQSEVEQLAD SDLSNLFQMN  720
NASSSGYAPA AASGSASGND PLNNQACLPS VKIGETSISS IPCSALTAQV HDLQALQFEP  780
QSDGLNNFLQ EQYYLDNVAV ADLDFSNQGK MRPIFCGNFE YDARQSDLER LFRKYGKVER  840
VDMKSGFAFI YMEDERDADD AIRALDRTEF GRKGRRLRVE WTKHERGIRR PGGSGGGGGG  900
SSGGGGGSRR SSTNSRPSKT LFVINFDPYS TRTRDLERHF ESYGKIVSVR IRRNFAFVQY  960
DSQDDATRAL EATNMSKLMD RVISVEYAVR DDDDRRNGYS PERGRDRSPE RGRDRRRSPS  1020
PYRRERGSPD YGRGSSRSPY NRKERASPDY GRGRSPSPYK RRDRASPEYG RPTSRSRSPH  1080
RRDRAGTDNA RGSSRSPYRK DKASPENGRG PSRSPYRREK CSAENDRSPS QSPYKRERPS  1140
SDNGRGPSHS PYGRDRASPE NGRGTSPGPV PDGRDSPYGG GAESPVNERY GSQSPAGEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-53	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OMO86001