PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO85952

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 987aa MW: 110281 Da PI: 7.2614

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85952	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.1	2.6e-09	207	271	17	82
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 + ++ rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ ++e++ +yf OMO85952 207 VAGHSTRGKTRAEKDREVAEFLNRHGINRDAKTAGTKWDNMLGEFRKVYEWERGSEKEQV-GKSYF 271 55667789999999***************************************9755544.44455 PP

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence
MGDNKGDTVK KQTPQTQQQQ QQQQQQLSSS SPKEALDQES SDSRQQKFIS APLYVPIGAT 60 SSTFEPQFEP VNPKRTRYNS GQWKLLPSPS TLQTQAQMAI ITTESSPSPT TTANPINPQT 120 QAHTTAASSS DTASSPPHSP LPSSTSGGQE TNKPEGEQFH HQFRKGKYVS PVWKPNEMLW 180 LARAWRVQYQ GGGGADGSGG GSSGGDVAGH STRGKTRAEK DREVAEFLNR HGINRDAKTA 240 GTKWDNMLGE FRKVYEWERG SEKEQVGKSY FRLSPYERKL HRLPASFDEE VFDELSQFMG 300 PRMRSTPQSR GAISSGDEGR APFLSSSSKA LPPPPPFKED ELLPISVRTK QQLVTTSGLS 360 GGETFFHGTR GSLLGFVDTS SSLDVGVNVT LPSSSSSSKE LRRIGKIRMT WEESVNLWAE 420 EGEHHRGRVR LFQGSSFLNA DELTFFDDAM VACTMEAFED GPLKGFSVDR FVNGQQVKVF 480 GRRKSSTTAS ASSSGFIERA QLPFAEPLIR TIPSLEFQDP TDYYLSCLRV PPTTLPSLFE 540 LSWHVQEPPP EEYRFPLRKD VYKDLPPGKE VLFTTSNELL DCRAIMYDII SPIIRTNPSL 600 TASTATSRDS FIGLWDDCIN RVVSKFCSLE MGIIRKSSSS LSLTSDQPLQ DQWPNVTGFI 660 RNLCLWRGEE TDQLREGQLD PPSLIVEKLL WTFMDLPYIF GYYAVGYSVT FCALSRSQDR 720 IIRTDIYSVD LLSPSERLKA LVPCLRIAGL LPLLADRCFI NNNAKQYFPF SDFERIDLGN 780 GNIIEMTPNF ATRSFSSKRK WAAVKEIYDI LDHRIPHAEF ICRESDKDLT LVFKPRGCKF 840 KPVNCEQLVE ALKYVTKALV ALHDLCFMHR DLGWDKVLRR SDRDNEWFVC GFDEAVGAPQ 900 LYPHVVAGGD ARGRHAPEMG RGLHGVKVDV WGIGVLVRTC GLANVPKMLR ELQNRCLDQN 960 PELRPTAADC YHHLLQVQSA SSSGAPY

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence

MGDNKGDTVK KQTPQTQQQQ QQQQQQLSSS SPKEALDQES SDSRQQKFIS APLYVPIGAT  60
SSTFEPQFEP VNPKRTRYNS GQWKLLPSPS TLQTQAQMAI ITTESSPSPT TTANPINPQT  120
QAHTTAASSS DTASSPPHSP LPSSTSGGQE TNKPEGEQFH HQFRKGKYVS PVWKPNEMLW  180
LARAWRVQYQ GGGGADGSGG GSSGGDVAGH STRGKTRAEK DREVAEFLNR HGINRDAKTA  240
GTKWDNMLGE FRKVYEWERG SEKEQVGKSY FRLSPYERKL HRLPASFDEE VFDELSQFMG  300
PRMRSTPQSR GAISSGDEGR APFLSSSSKA LPPPPPFKED ELLPISVRTK QQLVTTSGLS  360
GGETFFHGTR GSLLGFVDTS SSLDVGVNVT LPSSSSSSKE LRRIGKIRMT WEESVNLWAE  420
EGEHHRGRVR LFQGSSFLNA DELTFFDDAM VACTMEAFED GPLKGFSVDR FVNGQQVKVF  480
GRRKSSTTAS ASSSGFIERA QLPFAEPLIR TIPSLEFQDP TDYYLSCLRV PPTTLPSLFE  540
LSWHVQEPPP EEYRFPLRKD VYKDLPPGKE VLFTTSNELL DCRAIMYDII SPIIRTNPSL  600
TASTATSRDS FIGLWDDCIN RVVSKFCSLE MGIIRKSSSS LSLTSDQPLQ DQWPNVTGFI  660
RNLCLWRGEE TDQLREGQLD PPSLIVEKLL WTFMDLPYIF GYYAVGYSVT FCALSRSQDR  720
IIRTDIYSVD LLSPSERLKA LVPCLRIAGL LPLLADRCFI NNNAKQYFPF SDFERIDLGN  780
GNIIEMTPNF ATRSFSSKRK WAAVKEIYDI LDHRIPHAEF ICRESDKDLT LVFKPRGCKF  840
KPVNCEQLVE ALKYVTKALV ALHDLCFMHR DLGWDKVLRR SDRDNEWFVC GFDEAVGAPQ  900
LYPHVVAGGD ARGRHAPEMG RGLHGVKVDV WGIGVLVRTC GLANVPKMLR ELQNRCLDQN  960
PELRPTAADC YHHLLQVQSA SSSGAPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-08	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO85952