PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85515
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 301aa    MW: 33833.2 Da    PI: 8.6214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85515genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18111208195
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
               f+k+l++sdv++++r++lpk+ ae++   ++++e++ + + d +g  +W++k+++  ++ks++yvl+ ++ eFv+ +gL+ gD+++ +   + +++++v++
  OMO85515 111 FQKELKNSDVSSLRRMILPKRSAEAYlpVLESKEGIFINMDDIDGlHVWSFKYRFwpNNKSRMYVLE-NTGEFVNTHGLQLGDSIMVYQ--DsQNQKYVIQ 208
               99**************************555668899********9*******9989999999**99.******************994..4366666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MMMATPSVHE KPEAFGLVAG VEGVTMEGDK TTRRVSGRSG LTRDLMAAVP SFGVYRKKRM  60
ARQRRSSSTI KLLSFTPTST TSTPTSPPHV PSSSSSPPAR AIDPKRLRFL FQKELKNSDV  120
SSLRRMILPK RSAEAYLPVL ESKEGIFINM DDIDGLHVWS FKYRFWPNNK SRMYVLENTG  180
EFVNTHGLQL GDSIMVYQDS QNQKYVIQAK KASDEDIYTD IARNAVNDLI LHDNEVSKPT  240
SSYYYPTMDD TGGMSFIYDT TFSNDSPLDF LGGSLTNYSR MGSLETFGSV ENLSLDEFYR  300
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-92B3 family protein