PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85448
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 657aa    MW: 72536.7 Da    PI: 5.6746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85448genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.31.4e-1342916561374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
               l +lLl+cAeav+++d  la++++ +l+  ++p gd+mqR+a++fteAL+arla    +++++++  +p +  ++ns e+l+++++ ++++P++kf+h+ta
  OMO85448 291 LLHLLLACAEAVAKEDYLLARKYIHHLNRVVTPLGDSMQRVASCFTEALSARLAAtitTSPSTSSNPRPFTPFPSNSLEVLKIYQIVYQACPYIKFAHFTA 391
               579**************************************************99532334555555666666788************************* PP

      GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
               NqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef++ + ++led+++++++ + g
  OMO85448 392 NQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----SLESIRETGRSLTELAHSLHIPFEFHP-IGEQLEDIKPHMFNRRVG 487
               ***************************************************....9**************************.7***************** PP

      GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
               EalaVn+v +lhr++    +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vac
  OMO85448 488 EALAVNSVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVAC 582
               **************9..44444....5************************************************************************** PP

      GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               eg++r+erhe+lekWr+ +e  GFk vpls++a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  OMO85448 583 EGSDRIERHERLEKWRSIMEGKGFKGVPLSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 656
               *************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    
MINSMCGSMG SIKSENSCES IAESKKTPPS SEMEQSSLTP PSLNFPAVKF ELDGDVEVQS  60
PDSSIWETFF TDHFDSDFMI SSPVRNLPSP QISTYNFSNV QAMQGQSLLG CSPPRFSSQL  120
GSFSSSNHKG KGQSPLHRVF NSPNNQFMQV ESLSLPAIGD FLDDGYGGDH HQFQTTTKIS  180
GTGSSSNNMF DMTPNGGLLD YISMPNSSRF CPASETSSSA GCSQLTQQDQ VQYQVNSVPR  240
VPLSQQLQQE QQQEKQQQTS AAAPPQQNLG HTLMVPIPIG PEQEQDSGLQ LLHLLLACAE  300
AVAKEDYLLA RKYIHHLNRV VTPLGDSMQR VASCFTEALS ARLAATITTS PSTSSNPRPF  360
TPFPSNSLEV LKIYQIVYQA CPYIKFAHFT ANQAIFEAFE AEERVHVIDL DILQGYQWPA  420
FMQALAARPS GAPFLRITGV GPSLESIRET GRSLTELAHS LHIPFEFHPI GEQLEDIKPH  480
MFNRRVGEAL AVNSVNRLHR VPGNCLGNLL AMIRDQAPNI VTLVEQEASH NGPYFLGRFL  540
EALHYYSAIF DSLDATFPPD SAQRAKVEQY IFAPEIRNIV ACEGSDRIER HERLEKWRSI  600
MEGKGFKGVP LSSNAVTQSK ILLGLYSCDG YRLTEDKGCL LLGWQDRAIL AASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-98GRAS family protein