PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85252
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 315aa    MW: 33139.6 Da    PI: 4.934
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85252genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16223258134
      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
               Cs+Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg
  OMO85252 223 CSHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 258
               *****99999**********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MANSNRQPAS MYGSGAMSMQ QNLEEEDDDV PGGGGGGGEE SVDNPQVGYQ ESGAVVTVMD  60
NGMEEASHAN IYGQGSDITA GPGNGGADQL TLSFQGEVYV FDSVSPDKVQ AVLLLLGGYE  120
IPSGIPALGT VPVTQRGLGD FPGKSIQPQR AASLNRFREK RKERCFDKKI RYTVRKEVAL  180
RMQRKKGQFT SSKAISDEVA SASSGWSGTP GSGHDDSMQE TSCSHCGISS KSTPMMRRGP  240
AGPRTLCNAC GLKWANKGIL RDLSKPPTVP LPVQNPSAKP TEQSDAEAND SEAVTTTTDV  300
VSSSNGDNST VSAER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-80GATA family protein