PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84946
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 223aa    MW: 25547 Da    PI: 4.7579
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84946genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.53.3e-29281922181
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lL +  ea +++++el + +L  +se +sp g++ +++a+ + +     l++            e+    s++  aa+++f++++P+ +f+h++aN+aI
  OMO84946  28 IHLLKAYGEAREKNQTELGDVILRCVSEKSSPVGETWEKIAFNLSQDQGDYLMQ------------ES----SKNFQAAFRAFYQMFPYGRFAHFAANSAI 112
               688888889999999999999999999999999999999999887776666665............22....56778899********************* PP

      GRAS 103 leavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
               lea+ ++ +++Hi+Dfdi +G+QWp++++a+a ++    +lR+T +   +++   s  + e t+++L + A+++g++++ + +
  OMO84946 113 LEAMPSDaDMLHIVDFDIREGIQWPPMIEAMAWQR---KTLRLTSIRWGNEDlgqSPWTFEDTRRQLCDHAKSFGLNLKMEEM 192
               ****9987999*********************753...57******9988888888899*******************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MDATTSTQSS VLTIPGEAME IDNQLSIIHL LKAYGEAREK NQTELGDVIL RCVSEKSSPV  60
GETWEKIAFN LSQDQGDYLM QESSKNFQAA FRAFYQMFPY GRFAHFAANS AILEAMPSDA  120
DMLHIVDFDI REGIQWPPMI EAMAWQRKTL RLTSIRWGNE DLGQSPWTFE DTRRQLCDHA  180
KSFGLNLKME EMGIEDLVNE LQKMRKRGGN INGEYWLGLP WKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-18GRAS family protein