PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84829
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 722aa    MW: 79141.2 Da    PI: 8.5945
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84829genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.32e-11366390226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               +++ C ++++t tCk+Gd+CkF H+
  OMO84829 366 GEKDCAHYMQTRTCKFGDSCKFDHP 390
               7889********************8 PP

2zf-CCCH33.38.4e-11419443327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               ++ C++f++t  Ck+G++CkF+H++
  OMO84829 419 EPDCPYFLKTQRCKFGSKCKFNHPK 443
               789********************96 PP

3zf-CCCH37.92.9e-12468490527
               --SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
               +C f+++tGtCk+G++CkF+H++
  OMO84829 468 PCAFYMKTGTCKFGATCKFNHPK 490
               8********************96 PP

4zf-CCCH382.7e-12536559326
               S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
               ++ C+f+++tG CkyG++C+++H+
  OMO84829 536 EVDCPFYLKTGSCKYGASCRYNHP 559
               789********************9 PP

5zf-CCCH42.61e-13610634226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               ++ +C+++++tG+Ck+GdrCkF+H+
  OMO84829 610 GQTECDYYMKTGICKFGDRCKFHHP 634
               6789********************8 PP

6zf-CCCH39.31.1e-12666687627
               -SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
               C++++rtGtCkyG++CkF H+p
  OMO84829 666 CPYYMRTGTCKYGATCKFDHPP 687
               ********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MSSKTNKTLD SSEAELSESS SGLAQSDQKT TDSQFPKKKN NLTCTLPAPA DPRKMDRMGK  60
MTSPVTKVNE NLNHQNDHKM PSPRIPPPTP NSEIQHTSST TTSSMPTHTR QSNSSRSNSL  120
ESSMAHLRPH TGGDVRWEAV NSVSAKGPIG LSNFRLLKRL GYGDIGSVYL VELRGTNAYF  180
AMKIMDKASL ASRNKLLRAQ TEREILGLLD HPFLPTLYSY FDTDKFYCLV MEFCSGGNLH  240
SLRQKQPNKH FTEEAARYSS KSPSTSLSSA LQRYLDPDAT SHSHLINHLQ TWPPGVDVSS  300
SVAAAAAAAA AVPSVKRSSD VLYHQSVLDA HNTLGQTEDW YSTSSLVKRY RLESASTLTV  360
YPQRPGEKDC AHYMQTRTCK FGDSCKFDHP IWVPEGGIPG WKEVPLAAAA ESLPERAGEP  420
DCPYFLKTQR CKFGSKCKFN HPKDKLATSG ATESVIISVL PERPSEFPCA FYMKTGTCKF  480
GATCKFNHPK DIQKSSSGQD NAKEQIEIVI NSSGVTGDVK PALSHNSKGL PLRPEEVDCP  540
FYLKTGSCKY GASCRYNHPD RNAFTPPAAA ISNLNIGVGT SAASLYQTLI AQQTLSMLGV  600
AQTVYPQRPG QTECDYYMKT GICKFGDRCK FHHPIDRSES TTNQTSEQAV KLTLAGLPRR  660
EGAVHCPYYM RTGTCKYGAT CKFDHPPPGE VMAIPTEQGT SPAVGGEVKE VATLETNTTF  720
RI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-180C3H family protein