PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84829

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 722aa MW: 79141.2 Da PI: 8.5945

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84829	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	2e-11	366	390	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ OMO84829 366 GEKDCAHYMQTRTCKFGDSCKFDHP 390 7889********************8 PP
2	zf-CCCH	33.3	8.4e-11	419	443	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ OMO84829 419 EPDCPYFLKTQRCKFGSKCKFNHPK 443 789********************96 PP
3	zf-CCCH	37.9	2.9e-12	468	490	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C f+++tGtCk+G++CkF+H++ OMO84829 468 PCAFYMKTGTCKFGATCKFNHPK 490 8********************96 PP
4	zf-CCCH	38	2.7e-12	536	559	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ OMO84829 536 EVDCPFYLKTGSCKYGASCRYNHP 559 789********************9 PP
5	zf-CCCH	42.6	1e-13	610	634	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+GdrCkF+H+ OMO84829 610 GQTECDYYMKTGICKFGDRCKFHHP 634 6789********************8 PP
6	zf-CCCH	39.3	1.1e-12	666	687	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++++rtGtCkyG++CkF H+p OMO84829 666 CPYYMRTGTCKYGATCKFDHPP 687 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MSSKTNKTLD SSEAELSESS SGLAQSDQKT TDSQFPKKKN NLTCTLPAPA DPRKMDRMGK 60 MTSPVTKVNE NLNHQNDHKM PSPRIPPPTP NSEIQHTSST TTSSMPTHTR QSNSSRSNSL 120 ESSMAHLRPH TGGDVRWEAV NSVSAKGPIG LSNFRLLKRL GYGDIGSVYL VELRGTNAYF 180 AMKIMDKASL ASRNKLLRAQ TEREILGLLD HPFLPTLYSY FDTDKFYCLV MEFCSGGNLH 240 SLRQKQPNKH FTEEAARYSS KSPSTSLSSA LQRYLDPDAT SHSHLINHLQ TWPPGVDVSS 300 SVAAAAAAAA AVPSVKRSSD VLYHQSVLDA HNTLGQTEDW YSTSSLVKRY RLESASTLTV 360 YPQRPGEKDC AHYMQTRTCK FGDSCKFDHP IWVPEGGIPG WKEVPLAAAA ESLPERAGEP 420 DCPYFLKTQR CKFGSKCKFN HPKDKLATSG ATESVIISVL PERPSEFPCA FYMKTGTCKF 480 GATCKFNHPK DIQKSSSGQD NAKEQIEIVI NSSGVTGDVK PALSHNSKGL PLRPEEVDCP 540 FYLKTGSCKY GASCRYNHPD RNAFTPPAAA ISNLNIGVGT SAASLYQTLI AQQTLSMLGV 600 AQTVYPQRPG QTECDYYMKT GICKFGDRCK FHHPIDRSES TTNQTSEQAV KLTLAGLPRR 660 EGAVHCPYYM RTGTCKYGAT CKFDHPPPGE VMAIPTEQGT SPAVGGEVKE VATLETNTTF 720 RI

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MSSKTNKTLD SSEAELSESS SGLAQSDQKT TDSQFPKKKN NLTCTLPAPA DPRKMDRMGK  60
MTSPVTKVNE NLNHQNDHKM PSPRIPPPTP NSEIQHTSST TTSSMPTHTR QSNSSRSNSL  120
ESSMAHLRPH TGGDVRWEAV NSVSAKGPIG LSNFRLLKRL GYGDIGSVYL VELRGTNAYF  180
AMKIMDKASL ASRNKLLRAQ TEREILGLLD HPFLPTLYSY FDTDKFYCLV MEFCSGGNLH  240
SLRQKQPNKH FTEEAARYSS KSPSTSLSSA LQRYLDPDAT SHSHLINHLQ TWPPGVDVSS  300
SVAAAAAAAA AVPSVKRSSD VLYHQSVLDA HNTLGQTEDW YSTSSLVKRY RLESASTLTV  360
YPQRPGEKDC AHYMQTRTCK FGDSCKFDHP IWVPEGGIPG WKEVPLAAAA ESLPERAGEP  420
DCPYFLKTQR CKFGSKCKFN HPKDKLATSG ATESVIISVL PERPSEFPCA FYMKTGTCKF  480
GATCKFNHPK DIQKSSSGQD NAKEQIEIVI NSSGVTGDVK PALSHNSKGL PLRPEEVDCP  540
FYLKTGSCKY GASCRYNHPD RNAFTPPAAA ISNLNIGVGT SAASLYQTLI AQQTLSMLGV  600
AQTVYPQRPG QTECDYYMKT GICKFGDRCK FHHPIDRSES TTNQTSEQAV KLTLAGLPRR  660
EGAVHCPYYM RTGTCKYGAT CKFDHPPPGE VMAIPTEQGT SPAVGGEVKE VATLETNTTF  720
RI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-180	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO84829