PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84383

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 805aa MW: 89502.3 Da PI: 7.7755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84383	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.5e-06	75	112	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R r+++++ Lr+l+P+ +K++Ka+i Av Y+++Lq OMO84383 75 RGRMKEKLYALRSLVPNI-----TKMDKASIIGDAVLYVQDLQ 112 6799***********7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence
MDASRNYTLD QLPNDFELRD FIDDPNFDQF IDLIRGENEE SNIAGLDYDL INGCFVDKPQ 60 LQISATVPVD NGFGRGRMKE KLYALRSLVP NITKMDKASI IGDAVLYVQD LQMQAKKLKA 120 EISGLEASLA GSERYQESMN NPAKIRVNHP ICKKIFQLDM FQVEERGFYI KLVSNKGEGV 180 AASLYKALES LSNFTLQNSN LTTVYDRFSL TFTLNMILVF FATQLVHLFL KPLGIPLLAS 240 QIVAGLILGP AMLGKVGAFK SILIPADRNG VEVIETTAAL GFAIYLFLVG VKMDVRGAFT 300 TVKRATVIGS LSILSPLIVG LVVYEVMKDD NVDHNLERVT ITMCECLTSI SVIACVLSEL 360 KILNSELGHL ALSSATIGDL GSLIMTSVVS FYKKWGVSHN QALVNTGAML AYTIVLIFVL 420 RPMMFWIIRR TPEGRPVKQK YIYAIMLLAL GSALFANYFG RSAIFGTFIF GLAVPDGVFV 480 PSFCSRIPLK DSLALALIMT SKGILELSFF AGFRDNQIIG DGSFCILILG ILLNSTIVPI 540 LVKFLYDPVS RKYAGYQKRN IMHLKPDSEL RILACVHKPE NVAALIGFLN ATCPTEESPN 600 VVYVLHLTEL TARASPVFIT HQKQGNTTGG TFYEKFIFAF NQYEQNNWGL VTVNAFTAIS 660 PSQLMHEDIC TMALDKQTSF ILLPFHRKWS IDGSIESEHS NIRRLNCSVL ETAPCSIGIL 720 VDRAYNGNTM MFSKAAPRSS YCICIIFIGG KDDREALTLA KRMSQDPRVY QNGVNFQSWG 780 TLETFLPPQI FKAGHLYWWC NNNNM

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence

MDASRNYTLD QLPNDFELRD FIDDPNFDQF IDLIRGENEE SNIAGLDYDL INGCFVDKPQ  60
LQISATVPVD NGFGRGRMKE KLYALRSLVP NITKMDKASI IGDAVLYVQD LQMQAKKLKA  120
EISGLEASLA GSERYQESMN NPAKIRVNHP ICKKIFQLDM FQVEERGFYI KLVSNKGEGV  180
AASLYKALES LSNFTLQNSN LTTVYDRFSL TFTLNMILVF FATQLVHLFL KPLGIPLLAS  240
QIVAGLILGP AMLGKVGAFK SILIPADRNG VEVIETTAAL GFAIYLFLVG VKMDVRGAFT  300
TVKRATVIGS LSILSPLIVG LVVYEVMKDD NVDHNLERVT ITMCECLTSI SVIACVLSEL  360
KILNSELGHL ALSSATIGDL GSLIMTSVVS FYKKWGVSHN QALVNTGAML AYTIVLIFVL  420
RPMMFWIIRR TPEGRPVKQK YIYAIMLLAL GSALFANYFG RSAIFGTFIF GLAVPDGVFV  480
PSFCSRIPLK DSLALALIMT SKGILELSFF AGFRDNQIIG DGSFCILILG ILLNSTIVPI  540
LVKFLYDPVS RKYAGYQKRN IMHLKPDSEL RILACVHKPE NVAALIGFLN ATCPTEESPN  600
VVYVLHLTEL TARASPVFIT HQKQGNTTGG TFYEKFIFAF NQYEQNNWGL VTVNAFTAIS  660
PSQLMHEDIC TMALDKQTSF ILLPFHRKWS IDGSIESEHS NIRRLNCSVL ETAPCSIGIL  720
VDRAYNGNTM MFSKAAPRSS YCICIIFIGG KDDREALTLA KRMSQDPRVY QNGVNFQSWG  780
TLETFLPPQI FKAGHLYWWC NNNNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	2e-53	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO84383