PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84230
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 188aa    MW: 21614.8 Da    PI: 9.0462
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84230genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.3e-06153172525
               --SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
               +C+f+ r G+C +G+ C++ H
  OMO84230 153 ICSFYVR-GECTRGAECPYRH 172
               6**9999.**********977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MQMGGSVLIF PIICESCLGG NPYVRMTRAG YDKKCKICPR PFTVFRWRPG RGARFKKTEI  60
CQTCCKLNNV CQVCLLDPES GLPVQVRDTA LSINSNDAIP KSDVNREYFA EEHDRRARAG  120
LDYESSYGKV RPNDTIMKLQ RTTPYYKRNR AHICSFYVRG ECTRGAECPY RHEMPETGEL  180
SRQNIKDR