PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84146

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 376aa MW: 41638 Da PI: 8.1871

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84146	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.1e-41	81	157	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ OMO84146 81 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTINGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 157 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MEWNLKATSW DLTEFVEEAV PSMNAENGSS SSSYGVARNK GDFSVDLKLG RVGNSGEESK 60 MESSPSKRAR ATNNGTHQVS CLVDGCNSDL SNCRDYHRRH KVCELHSKTP QVTINGHKQR 120 FCQQCSRFHS LEEFDEGKRS CRKRLDGHNR RRRKPQPYPL SRSGSYFSNH QGTQMIQFSS 180 LHVYPSTTVV KPTWPGVTNS QTDSRHLNQQ QQLYSHEKQN LVVGSSSSNN RAGKQFTFLE 240 GDNNTPQNQT LPATSICQQL LRPAPFSEGS GGSSHNMFSD RLATPVQDSD CALSLLSSPQ 300 TQTSGISLIS SMVQPHSFPL VQPLGPSLQN HVIEPMDSVV VANGRDQTVH YPGMFHIGSE 360 GSSGTEASQT LPFHWQ

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MEWNLKATSW DLTEFVEEAV PSMNAENGSS SSSYGVARNK GDFSVDLKLG RVGNSGEESK  60
MESSPSKRAR ATNNGTHQVS CLVDGCNSDL SNCRDYHRRH KVCELHSKTP QVTINGHKQR  120
FCQQCSRFHS LEEFDEGKRS CRKRLDGHNR RRRKPQPYPL SRSGSYFSNH QGTQMIQFSS  180
LHVYPSTTVV KPTWPGVTNS QTDSRHLNQQ QQLYSHEKQN LVVGSSSSNN RAGKQFTFLE  240
GDNNTPQNQT LPATSICQQL LRPAPFSEGS GGSSHNMFSD RLATPVQDSD CALSLLSSPQ  300
TQTSGISLIS SMVQPHSFPL VQPLGPSLQN HVIEPMDSVV VANGRDQTVH YPGMFHIGSE  360
GSSGTEASQT LPFHWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	155	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-73	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO84146