PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84067

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 885aa MW: 98245.4 Da PI: 8.6581

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84067	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66	8e-21	793	873	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r e+++r++ k++++lWee+s +++ gf+rsp qCk+ w +l ++y++ k +k++ + +pyf++++ OMO84067 793 KWKPEEVKKLIKMRGELNSRFQVVKKRMALWEEISLSLSADGFTRSPGQCKSLWASLVQKYEESKSDKKSH-----KDWPYFEDMN 873 7*****************************************************************997.....68****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence
MAASTSLSLC PYTLPYQPRP RKRYISCSAG SPTPIGTRRT KVPRSRTGRL EGARKSMEDS 60 VQRKMEQFYE GSAGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK 120 IIPDTTFIKK WSHKIEAVVI THGHEDHIGA LPWVIPALDP NTPIYASSFT MELIKKRLKE 180 NGIFVPSRLK VFKTRKRFMA GPFEIEPLRV THSIPDCCGL VLRCADGTIL HTGDWKIDES 240 PLDGRIFDRQ ILEDLSKEGV TLMMSDSTNV LSPGRTTSER SVADALLRHI SSTKGRIITT 300 QFASNIHRLG SVKAAADLTG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA 360 PKDLIIVTTG SQAEPRAALN LASYGSSHAF KLNKEDVILY SAKVIPGNES RVMKMMNRIS 420 EIGSTIVMGK KEGLHTSGHG YRGELEEVLQ IVKPQHFLPI HGELLFLKEH ELLGKSTGIR 480 HTTVIKNGEM LGVSHLRNRR VLSNGFSSLG KENLQLMYSD GDKAFGTSTE LCVDERLRIA 540 SDGIIVVSME ILRPQNIDGR MENSLKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPV 600 NCPLAHMERT VSEVLRKMVR KYSGKRPEVI AIALENPAGV LSDELNQRLS GNSNVGFGIP 660 TLKKMVDGHP KKSQANKAKA KDDDTLHIEN APEQNLEVDD DEVGRLLPEE ETTTSSSDYA 720 ERHAPKTEDS DEFWKSFITS SSPVDNLVKD NNGLAPKEEH QSEIESDDSA SSGDDSEMPS 780 SRPKSSKSAK RNKWKPEEVK KLIKMRGELN SRFQVVKKRM ALWEEISLSL SADGFTRSPG 840 QCKSLWASLV QKYEESKSDK KSHKDWPYFE DMNQVLSDSE ATAAK

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence

MAASTSLSLC PYTLPYQPRP RKRYISCSAG SPTPIGTRRT KVPRSRTGRL EGARKSMEDS  60
VQRKMEQFYE GSAGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK  120
IIPDTTFIKK WSHKIEAVVI THGHEDHIGA LPWVIPALDP NTPIYASSFT MELIKKRLKE  180
NGIFVPSRLK VFKTRKRFMA GPFEIEPLRV THSIPDCCGL VLRCADGTIL HTGDWKIDES  240
PLDGRIFDRQ ILEDLSKEGV TLMMSDSTNV LSPGRTTSER SVADALLRHI SSTKGRIITT  300
QFASNIHRLG SVKAAADLTG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA  360
PKDLIIVTTG SQAEPRAALN LASYGSSHAF KLNKEDVILY SAKVIPGNES RVMKMMNRIS  420
EIGSTIVMGK KEGLHTSGHG YRGELEEVLQ IVKPQHFLPI HGELLFLKEH ELLGKSTGIR  480
HTTVIKNGEM LGVSHLRNRR VLSNGFSSLG KENLQLMYSD GDKAFGTSTE LCVDERLRIA  540
SDGIIVVSME ILRPQNIDGR MENSLKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPV  600
NCPLAHMERT VSEVLRKMVR KYSGKRPEVI AIALENPAGV LSDELNQRLS GNSNVGFGIP  660
TLKKMVDGHP KKSQANKAKA KDDDTLHIEN APEQNLEVDD DEVGRLLPEE ETTTSSSDYA  720
ERHAPKTEDS DEFWKSFITS SSPVDNLVKD NNGLAPKEEH QSEIESDDSA SSGDDSEMPS  780
SRPKSSKSAK RNKWKPEEVK KLIKMRGELN SRFQVVKKRM ALWEEISLSL SADGFTRSPG  840
QCKSLWASLV QKYEESKSDK KSHKDWPYFE DMNQVLSDSE ATAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO84067