PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 538aa    MW: 59736.6 Da    PI: 5.7861
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83686genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.37.4e-1391675371374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l+elL +cA+av+++d++++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P++kf++l aN a
  OMO83686 167 LKELLCACAKAVENNDMHMTDWLMTQLRQMVSVSGEPLQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPYFKFGYLSANGA 264
               5799*****************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I eav+ e+rvHiiDf+i qG+QW++L+qaLa+Rp+gpps+RiTg+++p+s+  +   le +g+rL+k+Ae ++vpfef++ +a + ++++ e+L ++pgE
  OMO83686 265 IAEAVKDESRVHIIDFQIAQGAQWVTLIQALAARPGGPPSIRITGIDDPTSSyaRGGGLEIVGQRLRKLAELCKVPFEFHA-AAISASEVQCENLGIRPGE 364
               **************************************************9999999************************.8999*************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               a++Vn++++lh+++desv ++++rd++++l kslsPkvv++veqea++n+++F+ rf+e++++y a+f+s++++lpre++eri+vE+++l+reivn++ace
  OMO83686 365 AIVVNFAMMLHHMPDESVGTQNHRDRLMRLAKSLSPKVVTLVEQEANTNTAPFFPRFVETMNHYLAVFESIDVTLPREHKERISVEQHCLAREIVNIIACE 465
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               g er+erhe l+kWr+r+++aGF+p pls+++++++k+ll+ + +  y++ee++g l+lgW+++ +++ +aWr
  OMO83686 466 GPERVERHELLGKWRSRFTMAGFTPCPLSSFVNSTIKTLLQSYCD-KYTLEERDGVLYLGWMNQVIIASCAWR 537
               ********************************************5.5*************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MQTSQKRKIS GQYPVQELDS YCWPPNQSSL DHYQSGSDDG GNGLQHSVQN LEQYCTLDSS  60
SGMQNSSSSA SFSPNGSPVS QPNSHSYPSD LHHSPDNTSG SPVSGSCVTD NEHDLRHMIR  120
QLETAMLGTE SENVDIHAIS SSDEATQVSL EAEKWKYMME MIARGDLKEL LCACAKAVEN  180
NDMHMTDWLM TQLRQMVSVS GEPLQRLGAY MLEGLVARLA SSGSSIYKAL RCKEPASAEL  240
LSYMHILYEV CPYFKFGYLS ANGAIAEAVK DESRVHIIDF QIAQGAQWVT LIQALAARPG  300
GPPSIRITGI DDPTSSYARG GGLEIVGQRL RKLAELCKVP FEFHAAAISA SEVQCENLGI  360
RPGEAIVVNF AMMLHHMPDE SVGTQNHRDR LMRLAKSLSP KVVTLVEQEA NTNTAPFFPR  420
FVETMNHYLA VFESIDVTLP REHKERISVE QHCLAREIVN IIACEGPERV ERHELLGKWR  480
SRFTMAGFTP CPLSSFVNST IKTLLQSYCD KYTLEERDGV LYLGWMNQVI IASCAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0GRAS family protein