PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO83686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 59736.6 Da PI: 5.7861 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 454.3 | 7.4e-139 | 167 | 537 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l+elL +cA+av+++d++++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e + s+e l+++++++ev+P++kf++l aN a OMO83686 167 LKELLCACAKAVENNDMHMTDWLMTQLRQMVSVSGEPLQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPYFKFGYLSANGA 264 5799*****************************************************************9...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 I eav+ e+rvHiiDf+i qG+QW++L+qaLa+Rp+gpps+RiTg+++p+s+ + le +g+rL+k+Ae ++vpfef++ +a + ++++ e+L ++pgE OMO83686 265 IAEAVKDESRVHIIDFQIAQGAQWVTLIQALAARPGGPPSIRITGIDDPTSSyaRGGGLEIVGQRLRKLAELCKVPFEFHA-AAISASEVQCENLGIRPGE 364 **************************************************9999999************************.8999*************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 a++Vn++++lh+++desv ++++rd++++l kslsPkvv++veqea++n+++F+ rf+e++++y a+f+s++++lpre++eri+vE+++l+reivn++ace OMO83686 365 AIVVNFAMMLHHMPDESVGTQNHRDRLMRLAKSLSPKVVTLVEQEANTNTAPFFPRFVETMNHYLAVFESIDVTLPREHKERISVEQHCLAREIVNIIACE 465 ***************************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g er+erhe l+kWr+r+++aGF+p pls+++++++k+ll+ + + y++ee++g l+lgW+++ +++ +aWr OMO83686 466 GPERVERHELLGKWRSRFTMAGFTPCPLSSFVNSTIKTLLQSYCD-KYTLEERDGVLYLGWMNQVIIASCAWR 537 ********************************************5.5*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence |
MQTSQKRKIS GQYPVQELDS YCWPPNQSSL DHYQSGSDDG GNGLQHSVQN LEQYCTLDSS 60 SGMQNSSSSA SFSPNGSPVS QPNSHSYPSD LHHSPDNTSG SPVSGSCVTD NEHDLRHMIR 120 QLETAMLGTE SENVDIHAIS SSDEATQVSL EAEKWKYMME MIARGDLKEL LCACAKAVEN 180 NDMHMTDWLM TQLRQMVSVS GEPLQRLGAY MLEGLVARLA SSGSSIYKAL RCKEPASAEL 240 LSYMHILYEV CPYFKFGYLS ANGAIAEAVK DESRVHIIDF QIAQGAQWVT LIQALAARPG 300 GPPSIRITGI DDPTSSYARG GGLEIVGQRL RKLAELCKVP FEFHAAAISA SEVQCENLGI 360 RPGEAIVVNF AMMLHHMPDE SVGTQNHRDR LMRLAKSLSP KVVTLVEQEA NTNTAPFFPR 420 FVETMNHYLA VFESIDVTLP REHKERISVE QHCLAREIVN IIACEGPERV ERHELLGKWR 480 SRFTMAGFTP CPLSSFVNST IKTLLQSYCD KYTLEERDGV LYLGWMNQVI IASCAWRC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO83686 |