PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83481

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CAMTA

Protein Properties

Length: 991aa MW: 111524 Da PI: 7.04

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83481	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	155	1.6e-48	80	196	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 lke ++rwl++ e+++iL+n++k+++ +++ p+ s++L++r+ +ryfrkDG++wk+k dgkt++E+hekLKvgg +vl+cyYah+e++ +fqrrcyw+ OMO83481 80 LKEaQHRWLRPAEVCEILINHAKFRVLDKPQFMPPAQSMLLFDRHAFRYFRKDGHKWKRKSDGKTIKEAHEKLKVGGEDVLHCYYAHGEDDGNFQRRCYWM 180 45559********************************************************************************************** PP CG-1 102 Leeelekivlvhylev 117 +e+++e+ v+vhy++v OMO83481 181 IEKDFERYVFVHYRQV 196 ************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence
MKPISRSRKN EAFHKYLKPG ALAQLRDSKI TARSHKLNSV RLNPVPTQIP PSQTQIQISD 60 FDQIPGFLKK TYGDLNQIIL KEAQHRWLRP AEVCEILINH AKFRVLDKPQ FMPPAQSMLL 120 FDRHAFRYFR KDGHKWKRKS DGKTIKEAHE KLKVGGEDVL HCYYAHGEDD GNFQRRCYWM 180 IEKDFERYVF VHYRQVEEGY NRSGSSRSLT GSLPSLVHAN SPLQYPIYGS ISLTASMKHE 240 VAGFPESGRT PPGSWSIGLN HDNSSTAPCF SPGIHYNMTN STISMPNQKL YVEQPIAGEL 300 ITHEQAEVTT LRDVLDELLS DDDDDDVQAA VGESLEIVIQ DYDFDVAPQD DSSLGIADSS 360 SEQIEINESK GGLKKLDSFG KWMDKEMGGD CDDFLIASSD HSINYWNPLD MIDQSDVSEG 420 SSLSHQMQLD HVYPLDPSLV EQLFTIADFA PNWAYSGVET KVLIIGRFLQ SKELSDATNW 480 CCMFGEIEVS AEVLGKNVIR CQVPCHSPGH VPFYITCCNR LACSEIKSFE FREKPPGFSF 540 DRNVKTTAEE EILHLKVGLA KLLDIVGPRR KWPGCSVEEC DKCRLTNDMV YWMGIACPND 600 GMQYSKDGLI QNLLKERLCE WLLCKFHEID GEDVRILDEE GQGVIHLAAS LGYNWAMGPI 660 IATGISPNFR DRRGRTGLHW ASYFGREETV ITLIELGANP GAIDDPTSCF PGGRTAADLA 720 SSRGHKGIAG FLAEIALRAE FSSLTMGQGH ETTQNAIETA TSNESCSLKR SLAAVRNSAH 780 AAALIQEALR TRDRQLLTKG NDDMSNKVSL EQLGIVGSLN RHQKTTTHFG DYLHTAAAKI 840 QHKYRGWKGR KEFLKIRNRI VKIQAHVRGH QVRKQYKMIL WSVGIIKKLI LWRRKSAGQR 900 GRFRAQESID STRPVEETGD DEYEHLRLGR QQKINGVEKA LARVQSMARD QEARDQYMRL 960 TTKFGESMVS STSTNVGSGQ EGKQLAFLGD Q

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence

MKPISRSRKN EAFHKYLKPG ALAQLRDSKI TARSHKLNSV RLNPVPTQIP PSQTQIQISD  60
FDQIPGFLKK TYGDLNQIIL KEAQHRWLRP AEVCEILINH AKFRVLDKPQ FMPPAQSMLL  120
FDRHAFRYFR KDGHKWKRKS DGKTIKEAHE KLKVGGEDVL HCYYAHGEDD GNFQRRCYWM  180
IEKDFERYVF VHYRQVEEGY NRSGSSRSLT GSLPSLVHAN SPLQYPIYGS ISLTASMKHE  240
VAGFPESGRT PPGSWSIGLN HDNSSTAPCF SPGIHYNMTN STISMPNQKL YVEQPIAGEL  300
ITHEQAEVTT LRDVLDELLS DDDDDDVQAA VGESLEIVIQ DYDFDVAPQD DSSLGIADSS  360
SEQIEINESK GGLKKLDSFG KWMDKEMGGD CDDFLIASSD HSINYWNPLD MIDQSDVSEG  420
SSLSHQMQLD HVYPLDPSLV EQLFTIADFA PNWAYSGVET KVLIIGRFLQ SKELSDATNW  480
CCMFGEIEVS AEVLGKNVIR CQVPCHSPGH VPFYITCCNR LACSEIKSFE FREKPPGFSF  540
DRNVKTTAEE EILHLKVGLA KLLDIVGPRR KWPGCSVEEC DKCRLTNDMV YWMGIACPND  600
GMQYSKDGLI QNLLKERLCE WLLCKFHEID GEDVRILDEE GQGVIHLAAS LGYNWAMGPI  660
IATGISPNFR DRRGRTGLHW ASYFGREETV ITLIELGANP GAIDDPTSCF PGGRTAADLA  720
SSRGHKGIAG FLAEIALRAE FSSLTMGQGH ETTQNAIETA TSNESCSLKR SLAAVRNSAH  780
AAALIQEALR TRDRQLLTKG NDDMSNKVSL EQLGIVGSLN RHQKTTTHFG DYLHTAAAKI  840
QHKYRGWKGR KEFLKIRNRI VKIQAHVRGH QVRKQYKMIL WSVGIIKKLI LWRRKSAGQR  900
GRFRAQESID STRPVEETGD DEYEHLRLGR QQKINGVEKA LARVQSMARD QEARDQYMRL  960
TTKFGESMVS STSTNVGSGQ EGKQLAFLGD Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-134	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OMO83481