PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83373

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WOX

Protein Properties

Length: 231aa MW: 26811.9 Da PI: 4.8784

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83373	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.2e-21	92	152	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +++ n +ps+++++e++ +l +++e++V++WFqNrRa+ k+ OMO83373 92 RQRWTPTPLQLQILENIYNQgNGTPSKQKIKEITVELaqhgQISETNVYNWFQNRRARSKR 152 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.5e-33	91	153	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPtp Q++iLe++y++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++k OMO83373 91 ARQRWTPTPLQLQILENIYNQGNGTPSKQKIKEITVELAQHGQISETNVYNWFQNRRARSKRK 153 789***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MEWQSQEMQE QQQQQEEEYL QFQIQNGICG KVMTDEQMEE LKKQIVAYQD ITKQLAEMHK 60 TMSAHQDLTG TWLGNPYYEP MLGSFGHKIT ARQRWTPTPL QLQILENIYN QGNGTPSKQK 120 IKEITVELAQ HGQISETNVY NWFQNRRARS KRKMQVSPSE AEVSPQDLAA KERRSKPENM 180 EFLDNSAQGV ENFYYQNSDA GLDQLMGKVE CSRVYDPYSS NNLVEQYGLL G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-60	WOX family protein

Link Out ? help Back to Top
Ensembl	OMO83373