PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83153
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 295aa    MW: 32611.4 Da    PI: 5.5723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83153genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09168212655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++ r+RR++i ++ +eL +l+P a      K++ a++L+ A +Y+k Lq
  OMO83153 168 SIAARQRRRKITNKTQELGKLIPGA-----HKMNTAQMLQAAFKYVKFLQ 212
               6788********************9.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MANLSYFSNS IMFNPSSSFQ QAENLDYLSG FDSNLLLFDT TTFVDPFLHN GLHFSPSEDP  60
YNSFNKYFPL EQFDDPFEFE FSQCQKFTAN SDYYCSNPNL SRINDHNSFF TAAGGSNIPN  120
PLPLSTLSSN CDHKLDNGKK TSSCSSAGAG AGAGAGAADS SSNLSSQSIA ARQRRRKITN  180
KTQELGKLIP GAHKMNTAQM LQAAFKYVKF LQAQVALLQS LLTSSIHQGA GEEALMQSQQ  240
QLQNLLASQA IQEKLYSEEK CLVPKHFLQA LVNDYQIDES KPLIIEDINR LLLIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-13bHLH family protein