PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO82972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 286aa MW: 30387.7 Da PI: 9.2221 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.4 | 1.9e-41 | 90 | 189 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l+ael+++++e OMO82972 90 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQTLQAELNAVRAE 189 7***********************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence |
MAGSESVAMS GGMWKLKQAH GISIRISNVK ARPPPSEQHC SIVLLGPTLS FKERFDEIGK 60 KIKTDAASYS SQMGRRHVLG PPGTLNTITP CAACKLLRRR CAEECPFSPY FSPHEPQKFA 120 AVHKVFGASN VSKLLMEVPE SQRADAANSL VYEANLRLRD PVYGCMGAIV TLQQQMQTLQ 180 AELNAVRAEI LKFKFREATT STGNLIPNST HAALISSGAV VTVAAPPSPL PPTPPPPPPP 240 PPPSVVVSSS SASSSSTSSL YNTPPPTSTT AAGYSSISSD NVPYFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-79 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO82972 |