PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82972
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 286aa    MW: 30387.7 Da    PI: 9.2221
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82972genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.41.9e-41901891100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l+ael+++++e
  OMO82972  90 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQTLQAELNAVRAE 189
               7***********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MAGSESVAMS GGMWKLKQAH GISIRISNVK ARPPPSEQHC SIVLLGPTLS FKERFDEIGK  60
KIKTDAASYS SQMGRRHVLG PPGTLNTITP CAACKLLRRR CAEECPFSPY FSPHEPQKFA  120
AVHKVFGASN VSKLLMEVPE SQRADAANSL VYEANLRLRD PVYGCMGAIV TLQQQMQTLQ  180
AELNAVRAEI LKFKFREATT STGNLIPNST HAALISSGAV VTVAAPPSPL PPTPPPPPPP  240
PPPSVVVSSS SASSSSTSSL YNTPPPTSTT AAGYSSISSD NVPYFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-79LBD family protein