PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82846

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 726aa MW: 77327.8 Da PI: 7.2893

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82846	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.1	1.4e-38	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dC+++pyfp ++p++f vh+++Gasnv kll++lp++ r +a++sl++eA++r++dPvyG+vg i+ lqq++++++++l+++++e OMO82846 7 RCAACKYLRRRCAPDCIFSPYFPPTNPQRFVSVHRIYGASNVAKLLQQLPTHLRAEAADSLCFEAQCRVEDPVYGCVGRISLLQQEIHKAETQLVKTQAE 106 6**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MNNSSGRCAA CKYLRRRCAP DCIFSPYFPP TNPQRFVSVH RIYGASNVAK LLQQLPTHLR 60 AEAADSLCFE AQCRVEDPVY GCVGRISLLQ QEIHKAETQL VKTQAEIAVL KSQTQLGHVD 120 DLQALQFEPQ SDDIASLQSS SNPFGITTPT QSSSLFTTTP PPWSTPALVP FPSTGGSGCP 180 PAFLRDGAES NNAQLFGTGS AFGTSTIAST TPATATVVGN PSTVAFGTSP TPAFGSSAPP 240 AFASGQGPPS FGCKTPEYLR NRNAFGGWNN GGSILGTGSA TTTSTTPPSV VQPSPAFATM 300 ASSSTTSSSN PRILFDPKSG IWSLEIPPTL GSWKCSTSVN PAASFGASST PSFTFDCSPA 360 LAPAPAAAFG GQSTSKSNPS VCFDSKSNIW SLEIPPTIGS WKCSCSIIPA ASFGSFSTPS 420 FSFDSTAPGL ASFRQPSPPS QEATHHFFGC RCNACAAKTS PPSPPSQEAT HHFFGCRCNA 480 CAAKSSPPRP FATSFEREGS KAIAYEATSE EPYGSGQNMK VQSISAMCFY NSESHEVIRW 540 KDYQLGQKGT PTPNPFQLSP PKFTFPPQPQ PQSEEKDTPT TSPPPTNSSF FQANSDTPKE 600 PIFGKPQQPQ PERWFGQNVN VTRNPFQSTS PFQSTSLFQS ASTQTSIFSP TSFNTPSFSV 660 NEEQPRSLFS TARSSIVQTT LDDREEPVFG KGITSLFRDK DNEEKPRSLS FGFGTPIKAD 720 KLESVE

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MNNSSGRCAA CKYLRRRCAP DCIFSPYFPP TNPQRFVSVH RIYGASNVAK LLQQLPTHLR  60
AEAADSLCFE AQCRVEDPVY GCVGRISLLQ QEIHKAETQL VKTQAEIAVL KSQTQLGHVD  120
DLQALQFEPQ SDDIASLQSS SNPFGITTPT QSSSLFTTTP PPWSTPALVP FPSTGGSGCP  180
PAFLRDGAES NNAQLFGTGS AFGTSTIAST TPATATVVGN PSTVAFGTSP TPAFGSSAPP  240
AFASGQGPPS FGCKTPEYLR NRNAFGGWNN GGSILGTGSA TTTSTTPPSV VQPSPAFATM  300
ASSSTTSSSN PRILFDPKSG IWSLEIPPTL GSWKCSTSVN PAASFGASST PSFTFDCSPA  360
LAPAPAAAFG GQSTSKSNPS VCFDSKSNIW SLEIPPTIGS WKCSCSIIPA ASFGSFSTPS  420
FSFDSTAPGL ASFRQPSPPS QEATHHFFGC RCNACAAKTS PPSPPSQEAT HHFFGCRCNA  480
CAAKSSPPRP FATSFEREGS KAIAYEATSE EPYGSGQNMK VQSISAMCFY NSESHEVIRW  540
KDYQLGQKGT PTPNPFQLSP PKFTFPPQPQ PQSEEKDTPT TSPPPTNSSF FQANSDTPKE  600
PIFGKPQQPQ PERWFGQNVN VTRNPFQSTS PFQSTSLFQS ASTQTSIFSP TSFNTPSFSV  660
NEEQPRSLFS TARSSIVQTT LDDREEPVFG KGITSLFRDK DNEEKPRSLS FGFGTPIKAD  720
KLESVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-50	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO82846