PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82085
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 586aa    MW: 66840 Da    PI: 6.9758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82085genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.7e-30132217187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  OMO82085 132 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 217
               8***********************************998*******************************98..55667*******85 PP
2trihelix55.21.8e-17433507276
  trihelix   2 WtkqevlaLiearremeerlrrg...klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
               W+++e+  Li++r++me+r+++g   + +  lWee+++km+  gfer+  +Ckekw++++ +  k+k+++++    +s
  OMO82085 433 WQESEISRLIQLRSSMESRFQQGgcsSEEIILWEEIAAKMACLGFERNGLMCKEKWDSISSYLMKTKKRKESS---NS 507
               *********************9533368889************************************999974...23 PP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    
MEMEDHHHHH HHSYGMADLR QLMNGRAAPT HFQAIPQAAA ADLFCTGRNL PPPQPHHQHH  60
HFDMMQMVAG RPVGHDPHQL MTRGLHHNDF PSDSTTTPTA TVAAVTSAST PSASCGFDGE  120
AAAFGGDGGT GRWPRQETLT LLEIRSRLDP KFKEANQKGP LWDEVSRIMC EEHGYQRSGK  180
KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ETSNSVSGPE TQLVGNSFRF  240
HGNTPNSINT QANQDVYHSS QKLCDSLSLS NSSDFDTSSS DDNDLTTEAP MHHLNDSSHK  300
RKKKRGWKVK IKEFIDSQMR KLMERQEAWL EKLTRTLEQK EQERVLREEE WRKEEAARID  360
REHRFWAKER AWIEARDSAL MDALQNLTGK QLKGSGQTQS QSPTQELMAT EILQNNSDQN  420
GSHNETINKD HGWQESEISR LIQLRSSMES RFQQGGCSSE EIILWEEIAA KMACLGFERN  480
GLMCKEKWDS ISSYLMKTKK RKESSNSRGC FYQNNEQSLF NTQGRTYCEI TDQQVQPNDG  540
SSPSNSHVGG NAVNVNDSCF RFLMADGEHN LWENYGLKLS NGDQNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-121Trihelix family protein