PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82009

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 496aa MW: 54447.1 Da PI: 6.4583

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82009	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.7	3.2e-18	101	187	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea+ e+ ++l+rg+l++ +Weev++++ r ++ ++s +qCk+k +nl+kryk +++++ ++ + s++p+f+++e OMO82009 101 EWSDAAIGCLLEAYLEKLTQLNRGNLRGRDWEEVAAAVteRCEKQSKSVEQCKNKVDNLKKRYKLERHRMTDGG-ITASHWPWFKKME 187 5***********************************777778899*********************95.55569*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MASSVDDDFS LLDDHQTNPN HQIVLHHHHP SYAPIQAPTP DNHDADDDSD SNFRGANFGN 60 NNNATSSDVR IEKRRDQEEI NDSGSKRHKQ STAEYRKDRE EWSDAAIGCL LEAYLEKLTQ 120 LNRGNLRGRD WEEVAAAVTE RCEKQSKSVE QCKNKVDNLK KRYKLERHRM TDGGITASHW 180 PWFKKMEEIV GNSQPGKAAP DEEKGSASPA TSVRQSKRYA SATPSPGGQI ISTKSKSPKW 240 KRVVFKISGA ALACTGPHNI DPKVAVLIAR EVAIACRLGV EVAIVVGGRN FFCGDSWVTA 300 TGLERSTAYQ IGMMASVMNS VLLQSSLEKM GVQTRVQTAF SVPEVAEPYS RQRAIRHLEK 360 GRVVIFGGIG AGTGNPLFST DTAAALRASE IHAEAVLKGT NVDGVYDCHS QDNNATFEHI 420 TFRELVSRGA AAMDMMALTF CEENNIPDAF IVVVTVTMCF SITTSVYVNL AAVFLQLELG 480 WILAEDDAGS TFEARL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MASSVDDDFS LLDDHQTNPN HQIVLHHHHP SYAPIQAPTP DNHDADDDSD SNFRGANFGN  60
NNNATSSDVR IEKRRDQEEI NDSGSKRHKQ STAEYRKDRE EWSDAAIGCL LEAYLEKLTQ  120
LNRGNLRGRD WEEVAAAVTE RCEKQSKSVE QCKNKVDNLK KRYKLERHRM TDGGITASHW  180
PWFKKMEEIV GNSQPGKAAP DEEKGSASPA TSVRQSKRYA SATPSPGGQI ISTKSKSPKW  240
KRVVFKISGA ALACTGPHNI DPKVAVLIAR EVAIACRLGV EVAIVVGGRN FFCGDSWVTA  300
TGLERSTAYQ IGMMASVMNS VLLQSSLEKM GVQTRVQTAF SVPEVAEPYS RQRAIRHLEK  360
GRVVIFGGIG AGTGNPLFST DTAAALRASE IHAEAVLKGT NVDGVYDCHS QDNNATFEHI  420
TFRELVSRGA AAMDMMALTF CEENNIPDAF IVVVTVTMCF SITTSVYVNL AAVFLQLELG  480
WILAEDDAGS TFEARL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	0.0	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO82009