PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO81993

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 470aa MW: 53434 Da PI: 6.4134

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO81993	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77	2.9e-24	98	197	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ +++d ++ OMO81993 98 KWTDSMVRLLIMAVYYIGDEAGTEVndptgkkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACRVVENQSLLDTMD 197 7************99999987533556667889999******************************************559*******9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MLGLEMPLHP QQSQNPQTAA QNPHHLHQNH PPQMVAYSSH HETEHSQHQP QSVKQGFTFA 60 ASKTKQLSPL SDEDEHGFTP DDNSADAKRK ISPWQRMKWT DSMVRLLIMA VYYIGDEAGT 120 EVNDPTGKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC EDKFNDLNKR YKRVNDILGR 180 GTACRVVENQ SLLDTMDLSP KMKEEVRKLL NSKHLFFREM CAYHNSCGHG TTAGAGGANH 240 SPEVATETSQ IQHQQAQHQQ QCLHSSDNAQ IAGNSGRIEA EGSKLGKVGS DDEDDDEDDD 300 SDDDEDEDDE EGMDGHTRGQ NGHGHGHEDD EDDEKSSRKR PRKGGLGMAS SPLMQQLNSE 360 VVNVIQDGSK TAWEKKQWMK MRLLQLEEQQ VSYQYQAFEL EKQRLKWVKF SSKKERDMER 420 AKLENERRRL ENERMVLLVR QKELELVDQH HHQAQQHSSN KRGDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MLGLEMPLHP QQSQNPQTAA QNPHHLHQNH PPQMVAYSSH HETEHSQHQP QSVKQGFTFA  60
ASKTKQLSPL SDEDEHGFTP DDNSADAKRK ISPWQRMKWT DSMVRLLIMA VYYIGDEAGT  120
EVNDPTGKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC EDKFNDLNKR YKRVNDILGR  180
GTACRVVENQ SLLDTMDLSP KMKEEVRKLL NSKHLFFREM CAYHNSCGHG TTAGAGGANH  240
SPEVATETSQ IQHQQAQHQQ QCLHSSDNAQ IAGNSGRIEA EGSKLGKVGS DDEDDDEDDD  300
SDDDEDEDDE EGMDGHTRGQ NGHGHGHEDD EDDEKSSRKR PRKGGLGMAS SPLMQQLNSE  360
VVNVIQDGSK TAWEKKQWMK MRLLQLEEQQ VSYQYQAFEL EKQRLKWVKF SSKKERDMER  420
AKLENERRRL ENERMVLLVR QKELELVDQH HHQAQQHSSN KRGDPSSITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	9e-71	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO81993