PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO81735

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 492aa MW: 54635.9 Da PI: 4.8496

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO81735	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	35.3	3.5e-11	299	350	3	50
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....k 50 GfrF P deel+ +yL++kv + +l+ + i+ev++y ++P++L + OMO81735 299 LGFRFCPLDEELILRYLRQKVLNMPLPP-NRINEVNLYGYNPEKLADdwvlcR 350 6**********************999.77************73244442 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MSTGEGKIVC VTGASGYIAS CLVKLLLLRG YTVKASVRDP NDPRKTQHLL SLEGAVDRLK 60 LFKANLLEEG SYDSVVEGCE GVFHTASPFY HDVTDPQAEL LDPAVKGTLN VLSSCAKTPS 120 VKRVVLTSSI AAVAYNGKPR TPDVVIDESW FTDPDYCRGL KLWYVVSKTL AEDAAWKFSK 180 EKGIDMVALN PAMVIGPLLQ PTLNTSAAAV LSLIKGAQTF PNATFGWVNV KDVANAHIQA 240 FEIPSANGRY CLVERVAHYS EIVEILRELY PSFQLPEKCA DDKPYVPKYQ VSKEKAKTLG 300 FRFCPLDEEL ILRYLRQKVL NMPLPPNRIN EVNLYGYNPE KLADDWVLCR IYKKDEKSNA 360 RASSKDHEED QSSLIYHEDS NELMNMEFDH NSVADSLDYS NAFGNLAFDG AYHHQLSSLS 420 IGGSSPAYPF RSSFPVRVQD DIWSFANLDF ASQLEIFGVP FVDPLINLDN ILPVDSPDDS 480 DKPGPDNSRM DD

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MSTGEGKIVC VTGASGYIAS CLVKLLLLRG YTVKASVRDP NDPRKTQHLL SLEGAVDRLK  60
LFKANLLEEG SYDSVVEGCE GVFHTASPFY HDVTDPQAEL LDPAVKGTLN VLSSCAKTPS  120
VKRVVLTSSI AAVAYNGKPR TPDVVIDESW FTDPDYCRGL KLWYVVSKTL AEDAAWKFSK  180
EKGIDMVALN PAMVIGPLLQ PTLNTSAAAV LSLIKGAQTF PNATFGWVNV KDVANAHIQA  240
FEIPSANGRY CLVERVAHYS EIVEILRELY PSFQLPEKCA DDKPYVPKYQ VSKEKAKTLG  300
FRFCPLDEEL ILRYLRQKVL NMPLPPNRIN EVNLYGYNPE KLADDWVLCR IYKKDEKSNA  360
RASSKDHEED QSSLIYHEDS NELMNMEFDH NSVADSLDYS NAFGNLAFDG AYHHQLSSLS  420
IGGSSPAYPF RSSFPVRVQD DIWSFANLDF ASQLEIFGVP FVDPLINLDN ILPVDSPDDS  480
DKPGPDNSRM DD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	6e-08	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO81735