PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO81687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 662aa MW: 72965.2 Da PI: 6.8554 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.1e-08 | 272 | 293 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f++ G Ck+Gd C +aHg OMO81687 272 VPCPDFRK-GDCKRGDLCDYAHG 293 79******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence |
MGSLTGVIGD KCSFSVLLEY AADNDVEGFQ RSIRDVSLLG EVGLWYGRLK FSRQIAVEYR 60 TPLMIAARYG SVDVMKLILS LSEIDVNLSC DPDKSTALHC AASGGSIKAV EVVKLLLLAG 120 ADPCVIDANG HRPFDVIVAP WKMPQIKVAL EELLNCDSPV CLEDLQESTV SWSPGSSSLS 180 SSLDSCCSSL VSDAKISVDN HVSSAPERKE YLVDPSIDIK SGIYSTDDFR MFSFKIRHCS 240 RAYSHDWTEC PFAHPGENAR RRDPRKFHYS AVPCPDFRKG DCKRGDLCDY AHGIFESWLH 300 PAQYRTRLCK DGITCNRRVC FFAHKPEELR PLYVSGLGFQ SPQSAASAAV PVAINFVPGS 360 PSALSAMPIS PFSPAISPSP HGICQSPMAW PQQNVPTLHL PGSNLHASRL RSSLNARDIP 420 AVERSMSEDF VMHQQQHFNS LSCLSQPQLA NKSSNLDGRF STEASSPRCR DQVTPISSAT 480 HKSVLLNQLH QQQRVLSPIK PNIFSPKKDH PLKHSAFDDS FSEKSSPWDV EPLSPLNSHL 540 SSFTNLDKQQ QLFRSLSSRE GDYKFSDDLE SKGLVGSPVK SWSTWESPNG KLDWSVQEDE 600 LRHHGVKAAG SWAQLVKESP SVKTTTADSG RTLSVEDSRS NSGDHAILSA WHEQLQLDKI 660 IS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO81687 |