PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 662aa    MW: 72965.2 Da    PI: 6.8554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81687genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-08272293426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               ++C++f++ G Ck+Gd C +aHg
  OMO81687 272 VPCPDFRK-GDCKRGDLCDYAHG 293
               79******.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    
MGSLTGVIGD KCSFSVLLEY AADNDVEGFQ RSIRDVSLLG EVGLWYGRLK FSRQIAVEYR  60
TPLMIAARYG SVDVMKLILS LSEIDVNLSC DPDKSTALHC AASGGSIKAV EVVKLLLLAG  120
ADPCVIDANG HRPFDVIVAP WKMPQIKVAL EELLNCDSPV CLEDLQESTV SWSPGSSSLS  180
SSLDSCCSSL VSDAKISVDN HVSSAPERKE YLVDPSIDIK SGIYSTDDFR MFSFKIRHCS  240
RAYSHDWTEC PFAHPGENAR RRDPRKFHYS AVPCPDFRKG DCKRGDLCDY AHGIFESWLH  300
PAQYRTRLCK DGITCNRRVC FFAHKPEELR PLYVSGLGFQ SPQSAASAAV PVAINFVPGS  360
PSALSAMPIS PFSPAISPSP HGICQSPMAW PQQNVPTLHL PGSNLHASRL RSSLNARDIP  420
AVERSMSEDF VMHQQQHFNS LSCLSQPQLA NKSSNLDGRF STEASSPRCR DQVTPISSAT  480
HKSVLLNQLH QQQRVLSPIK PNIFSPKKDH PLKHSAFDDS FSEKSSPWDV EPLSPLNSHL  540
SSFTNLDKQQ QLFRSLSSRE GDYKFSDDLE SKGLVGSPVK SWSTWESPNG KLDWSVQEDE  600
LRHHGVKAAG SWAQLVKESP SVKTTTADSG RTLSVEDSRS NSGDHAILSA WHEQLQLDKI  660
IS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0C3H family protein