PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO81532

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 727aa MW: 83676.7 Da PI: 8.57

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO81532	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.3	4.3e-12	64	108	45	90
FAR1 45 kkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +kk+++ + +raetr+gCka++ +k+ ++kw+v++++++HnHel OMO81532 64 TKKRTRVNPERAETRIGCKARMYLKRA-NDKWVVSSFVTDHNHELL 108 3444566779**************9.9*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MNDKDLETIL SDDYPIDDED IDNDENEQNS VSSSKNNVEL PSLKYSMYRP LEPCQGRVLD 60 IRSTKKRTRV NPERAETRIG CKARMYLKRA NDKWVVSSFV TDHNHELLTP KSTSFLRGHR 120 VITHAQKNLI DTLNEAGVPP RKIMSVLTKE SGGDWNAGCV PIDVQNYLGS KRRKLLAQGD 180 AQKLLHYFIQ NQSKNPWFFY AIQVDENGHM GNCFWADARS RLAYRHFGDV VTFDATYLTN 240 CYGMPFVPFT GVNHHHQSVM FGCALLVNKK IESYVWLLET WLEAMLGQAP TTIITDDCPS 300 MKNAIAQVLP NTTHKLCMWH ILQKVPEHLA FVYNKHPLFK DEFHSCIHDT MTIDEFEFEW 360 NVLLATYGLE ENGWMKYLYM RREKWVPAFL RTTFCAGMST TQRSESMNKF FKDYVRSSTL 420 VSDFVHQYDK ALNARYQKEK EKDVKTKSSK AILKTCYKME ADAGKHYTRK MFSKFQDELF 480 SSQNYRASKD RDDGEKKIYK VIPHGKEKPI HEVSLDISDN KTICTCHKFE FVGILCRHIL 540 VVFVKKSLVN SLPKCFILER WTIDAKRHTI PDIAGVDVIQ ADTQISSTLM RNSLMMQFLE 600 VAENGSKSRR KYEHLSHSLQ RIHEEILAIS DENEENLEAS VPTPNFEATN LDESNIVMTL 660 QDPLHVRSRG RPKSLRAKNP KENQSKPSGI KRKCTMCKAE GHNKTTCLSL KPSLTAEILF 720 SSAVGVK

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MNDKDLETIL SDDYPIDDED IDNDENEQNS VSSSKNNVEL PSLKYSMYRP LEPCQGRVLD  60
IRSTKKRTRV NPERAETRIG CKARMYLKRA NDKWVVSSFV TDHNHELLTP KSTSFLRGHR  120
VITHAQKNLI DTLNEAGVPP RKIMSVLTKE SGGDWNAGCV PIDVQNYLGS KRRKLLAQGD  180
AQKLLHYFIQ NQSKNPWFFY AIQVDENGHM GNCFWADARS RLAYRHFGDV VTFDATYLTN  240
CYGMPFVPFT GVNHHHQSVM FGCALLVNKK IESYVWLLET WLEAMLGQAP TTIITDDCPS  300
MKNAIAQVLP NTTHKLCMWH ILQKVPEHLA FVYNKHPLFK DEFHSCIHDT MTIDEFEFEW  360
NVLLATYGLE ENGWMKYLYM RREKWVPAFL RTTFCAGMST TQRSESMNKF FKDYVRSSTL  420
VSDFVHQYDK ALNARYQKEK EKDVKTKSSK AILKTCYKME ADAGKHYTRK MFSKFQDELF  480
SSQNYRASKD RDDGEKKIYK VIPHGKEKPI HEVSLDISDN KTICTCHKFE FVGILCRHIL  540
VVFVKKSLVN SLPKCFILER WTIDAKRHTI PDIAGVDVIQ ADTQISSTLM RNSLMMQFLE  600
VAENGSKSRR KYEHLSHSLQ RIHEEILAIS DENEENLEAS VPTPNFEATN LDESNIVMTL  660
QDPLHVRSRG RPKSLRAKNP KENQSKPSGI KRKCTMCKAE GHNKTTCLSL KPSLTAEILF  720
SSAVGVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-155	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO81532