PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO81141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 21097.9 Da PI: 8.0109 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 215.5 | 1.7e-66 | 6 | 160 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q la ++ ++ + +++n+++ ++++ +++ s +n OMO81141 6 DVAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLAWQDI--------QAPNYAAQDHNYRMDLGSSSKCNNKFSIRPPATN 98 5679************************************************9999995........4556666666777666666666666666665666 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl OMO81141 99 ATEERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 160 666655....89****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence |
MSSCVDVAAE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLA 60 WQDIQAPNYA AQDHNYRMDL GSSSKCNNKF SIRPPATNAT EERVVNRPPE KRQRVPSAYN 120 QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLETNNQNKL DDASEKHLMS 180 RTALLNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 2e-90 | YABBY family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO81141 |