PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80908
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 544aa    MW: 59478.3 Da    PI: 5.2003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80908genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.15.9e-1301595261374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
               lv+ L++cAe+v+ g+l+la++l+  ++ l  + ++g  + ++a++f  AL++r+++  + +  ++l  s        e+   ++ f+e++P+lkf+h+ta
  OMO80908 159 LVHMLMTCAECVQRGELSLATSLIDDMQGLltRVNTGCGIGKVASHFIDALSRRIFQgIGGGGGSILGGS------AYENEILYHHFYEACPYLKFAHFTA 253
               689*************************9977888899******************93333333333333......3455567889*************** PP

      GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
               NqaIlea+eg+++vH++Df++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rled+++++L+v+p+
  OMO80908 254 NQAILEAFEGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLEDVKPWMLQVNPK 354
               ***************************************************************************************************** PP

      GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
               Ea+aVn+++qlhrll ++ + +s++++vL+ ++sl+Pk+++vveqea+hn++ Fl+rf+eal+yys++fdslea    + + ++ + + ++++ei nvv+c
  OMO80908 355 EAVAVNSIMQLHRLLGSDPTRTSPIETVLSWIRSLNPKIMTVVEQEANHNQPGFLDRFSEALYYYSTMFDSLEAC---TVQPEKALAEIYIQKEIANVVSC 452
               ************************************************************************998...578888888999*********** PP

      GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               eg++r+erhe l+kWr rl+ aGFkp+pl+++a kqa++ll  ++ +gy vee++g+l+lgW++rpL+++SaW+
  OMO80908 453 EGSARVERHEPLAKWRTRLNGAGFKPLPLGSNAFKQASMLLTLFSAEGYAVEENEGCLTLGWHSRPLIAASAWQ 526
               *************************************************************************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MVLYDSAMSA GSSSGSSSSS SSKPPPSSLQ QDIDGLLAGA GYKVRSSELR QVAQRLERLE  60
TAMGNSPADL SQLASDAVHY NPSDLASWVD SLLSEFTQPP CQSEFMMDPV TNQPVVNNGW  120
TTNEPHAPQV HQNISYEQQN LNPQLTVVTA MEEDSGIRLV HMLMTCAECV QRGELSLATS  180
LIDDMQGLLT RVNTGCGIGK VASHFIDALS RRIFQGIGGG GGSILGGSAY ENEILYHHFY  240
EACPYLKFAH FTANQAILEA FEGHDCVHVV DFNLMHGLQW PALIQALALR PGGPPLLRLT  300
GIGPPSPDGR DSLREIGLRL AELARSVNVR FAFRGVAASR LEDVKPWMLQ VNPKEAVAVN  360
SIMQLHRLLG SDPTRTSPIE TVLSWIRSLN PKIMTVVEQE ANHNQPGFLD RFSEALYYYS  420
TMFDSLEACT VQPEKALAEI YIQKEIANVV SCEGSARVER HEPLAKWRTR LNGAGFKPLP  480
LGSNAFKQAS MLLTLFSAEG YAVEENEGCL TLGWHSRPLI AASAWQAVTD PAAEFPTWDN  540
RQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-149GRAS family protein