PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO80908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 544aa MW: 59478.3 Da PI: 5.2003 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 425.1 | 5.9e-130 | 159 | 526 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+ L++cAe+v+ g+l+la++l+ ++ l + ++g + ++a++f AL++r+++ + + ++l s e+ ++ f+e++P+lkf+h+ta OMO80908 159 LVHMLMTCAECVQRGELSLATSLIDDMQGLltRVNTGCGIGKVASHFIDALSRRIFQgIGGGGGSILGGS------AYENEILYHHFYEACPYLKFAHFTA 253 689*************************9977888899******************93333333333333......3455567889*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 NqaIlea+eg+++vH++Df++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rled+++++L+v+p+ OMO80908 254 NQAILEAFEGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLEDVKPWMLQVNPK 354 ***************************************************************************************************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 Ea+aVn+++qlhrll ++ + +s++++vL+ ++sl+Pk+++vveqea+hn++ Fl+rf+eal+yys++fdslea + + ++ + + ++++ei nvv+c OMO80908 355 EAVAVNSIMQLHRLLGSDPTRTSPIETVLSWIRSLNPKIMTVVEQEANHNQPGFLDRFSEALYYYSTMFDSLEAC---TVQPEKALAEIYIQKEIANVVSC 452 ************************************************************************998...578888888999*********** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eg++r+erhe l+kWr rl+ aGFkp+pl+++a kqa++ll ++ +gy vee++g+l+lgW++rpL+++SaW+ OMO80908 453 EGSARVERHEPLAKWRTRLNGAGFKPLPLGSNAFKQASMLLTLFSAEGYAVEENEGCLTLGWHSRPLIAASAWQ 526 *************************************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence |
MVLYDSAMSA GSSSGSSSSS SSKPPPSSLQ QDIDGLLAGA GYKVRSSELR QVAQRLERLE 60 TAMGNSPADL SQLASDAVHY NPSDLASWVD SLLSEFTQPP CQSEFMMDPV TNQPVVNNGW 120 TTNEPHAPQV HQNISYEQQN LNPQLTVVTA MEEDSGIRLV HMLMTCAECV QRGELSLATS 180 LIDDMQGLLT RVNTGCGIGK VASHFIDALS RRIFQGIGGG GGSILGGSAY ENEILYHHFY 240 EACPYLKFAH FTANQAILEA FEGHDCVHVV DFNLMHGLQW PALIQALALR PGGPPLLRLT 300 GIGPPSPDGR DSLREIGLRL AELARSVNVR FAFRGVAASR LEDVKPWMLQ VNPKEAVAVN 360 SIMQLHRLLG SDPTRTSPIE TVLSWIRSLN PKIMTVVEQE ANHNQPGFLD RFSEALYYYS 420 TMFDSLEACT VQPEKALAEI YIQKEIANVV SCEGSARVER HEPLAKWRTR LNGAGFKPLP 480 LGSNAFKQAS MLLTLFSAEG YAVEENEGCL TLGWHSRPLI AASAWQAVTD PAAEFPTWDN 540 RQPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-149 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO80908 |