PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80495
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 605aa    MW: 67083.5 Da    PI: 5.8889
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80495genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.35.9e-1312326011373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cA+a+s++++   ++l+a+ +  +s  g+p+qRl ay++e+L ar   s+s++y+al+++e +    ++ l+++++++e++P+lkf++++aN a
  OMO80495 232 LKQLLIACAKALSDNNMDDFDKLIAKARGAVSICGEPIQRLGAYMVEGLVARKEASGSNIYRALHCREPE---GKDLLSYMQILYEICPYLKFGYMAANGA 329
               689******************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++g+rLa + e++++p+ef+  v     d++ e+L+v+pgE
  OMO80495 330 IAEACRTEDRIHIIDFQIAQGTQWVTLLQALAARPGGAPHVRITGIDDPVSNyaRGGGLEAVGRRLAALSEKFNIPVEFHG-VPVFAPDITKEMLDVRPGE 429
               *************************************************99999999************************.68889999*********** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               alaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl rf+e+leyy a+f+s++++lpr+ +eri+vE+++l+r+ivnv+ace
  OMO80495 430 ALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESNTNTAPFLPRFVETLEYYLAIFESIDETLPRDRKERINVEQHCLARDIVNVIACE 530
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               g+er+erhe ++kW++rl++aGF+++pls+++++ +++ll  ++ + y++ e++g+++lgWkdr+L+s+SaW
  OMO80495 531 GKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLMCYS-KNYTLVEKDGAMLLGWKDRNLISASAW 601
               ****************************************8888.55************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    
MDAHAHQVFR YGLTGAGLSY SSSYSAIPSI PNRLFSSLKS DIGNSPNSPF STQFDSPFST  60
QFDSPFSTQF DCDTNTTLSD SQEQHSSTEN HSGLSPSCNS SLESNAYFHQ LSPSLDCKRE  120
SLPLCSGGTS YIQDVNSSPK IYTLQELETA LMAPDEDEEV TTPSVSYGES SRPQTTGQRS  180
RAWSQERQGS MALQPQTSIV SRHRQSTEVA RVEKRQKGIE DLSLQGIPPG NLKQLLIACA  240
KALSDNNMDD FDKLIAKARG AVSICGEPIQ RLGAYMVEGL VARKEASGSN IYRALHCREP  300
EGKDLLSYMQ ILYEICPYLK FGYMAANGAI AEACRTEDRI HIIDFQIAQG TQWVTLLQAL  360
AARPGGAPHV RITGIDDPVS NYARGGGLEA VGRRLAALSE KFNIPVEFHG VPVFAPDITK  420
EMLDVRPGEA LAVNFPLQLH HTPDESVDVN NPRDGLLRMV KSLSPKVTTL VEQESNTNTA  480
PFLPRFVETL EYYLAIFESI DETLPRDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL  540
FGKWKSRLTM AGFRQYPLSS YVNSVIRSLL MCYSKNYTLV EKDGAMLLGW KDRNLISASA  600
WHCDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-179GRAS family protein