PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80289
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 289aa    MW: 33362.8 Da    PI: 8.2199
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80289genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-14952245
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               ie++  r+  +  R++ +lKKA+ELS+LCd +++viif ++ +
  OMO80289  9 LIEDDKARKNVYETRKKNLLKKAQELSILCDSKILVIIFDQDKQ 52
              699999*********************************88765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MVKRMEGKLI EDDKARKNVY ETRKKNLLKK AQELSILCDS KILVIIFDQD KQKHEIWPDN  60
DEEEARQIIN RFKQKQVRGA SKRASRSAAR NQKERLGEKF PISEYKRVIN GPSENQLQNL  120
CHELDAKIAD VKNVIKSKQG VTEEPKIAAY QEPVPIQQDQ SFHQMLYHKP NFEDFSMNMM  180
QNGIVSYPSQ FSGSYSSSNI PFMPLAIHSD YPADTEFYHI PPPDAYYPHT QQFGGSSTIS  240
NIPFVPLTTH FDDLTRLQPA DMNANFLKRH QDPNINYVPA PPTTHLLFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.19e-09M-type_MADS family protein