PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80286

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 330aa MW: 37781.4 Da PI: 7.6538

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80286	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.8	4.9e-15	257	281	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd C+FaHg OMO80286 257 KTELCNKWQETGTCPYGDHCQFAHG 281 8***********************8 PP
2	zf-CCCH	22.4	2.2e-07	294	319	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ OMO80286 294 YKTEVCRMVLAGQSCPYGHRCHFRHS 319 9********99********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MEKPTAPSCN QSTYSAAMAT SSSSTVDSQD YLSSPLSPPQ DDLQYNNYYG DIATDFCSMY 60 NSIFQPNYPL PHSLSLTPSS CSSSEDFNLR LTSDAIATEH RLNQARLILE YQQLCDHYDL 120 CLSRLQTLFR EVEMLRRENT ELRLANAELI KLLSLSKSTL RPQATGEEVS DWNVKRWERP 180 RNNTINGYNA QKTVVPKSVS VRSCSYVKVN QQRQHGSSNN QLQRPLNPSL RVYVPSEARR 240 EDQKAMELEV YNQGMVKTEL CNKWQETGTC PYGDHCQFAH GITELRPVIR HPRYKTEVCR 300 MVLAGQSCPY GHRCHFRHSL SDQERLLITP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-74	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO80286