PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80286
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 330aa    MW: 37781.4 Da    PI: 7.6538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80286genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.84.9e-15257281226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               ktelC+ +++tGtC+yGd C+FaHg
  OMO80286 257 KTELCNKWQETGTCPYGDHCQFAHG 281
               8***********************8 PP
2zf-CCCH22.42.2e-07294319126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               ykte Cr  +++  C+yG rC+F H+
  OMO80286 294 YKTEVCRMVLAGQSCPYGHRCHFRHS 319
               9**********99**********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MEKPTAPSCN QSTYSAAMAT SSSSTVDSQD YLSSPLSPPQ DDLQYNNYYG DIATDFCSMY  60
NSIFQPNYPL PHSLSLTPSS CSSSEDFNLR LTSDAIATEH RLNQARLILE YQQLCDHYDL  120
CLSRLQTLFR EVEMLRRENT ELRLANAELI KLLSLSKSTL RPQATGEEVS DWNVKRWERP  180
RNNTINGYNA QKTVVPKSVS VRSCSYVKVN QQRQHGSSNN QLQRPLNPSL RVYVPSEARR  240
EDQKAMELEV YNQGMVKTEL CNKWQETGTC PYGDHCQFAH GITELRPVIR HPRYKTEVCR  300
MVLAGQSCPY GHRCHFRHSL SDQERLLITP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-74C3H family protein