PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80196

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 298aa MW: 32413.9 Da PI: 7.5771

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80196	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.1	1e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++l OMO80196 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVL 104 6*************************************************************************************************998 PP DUF260 97 lke 99 ++ OMO80196 105 KGA 107 766 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PIASEAAANG 120 QGPPLKAYDI RHVSKDENSA ASNDLQRVKT RCRVKRSVKS KLNKPVVEEE NRAAEAEVRC 180 YMDEGNRSTS HESSLSHQSE LAAMDGESKE TESMVSVETA AASRLFMTEP EFGGKVPSEE 240 RVAEGGGEIG LELTLGFQPV VTRACHVVVP VKKRRIEGYG TCEDSQTCKV ELGLDYSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-104	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO80196