PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80125

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 490aa MW: 53935.3 Da PI: 9.0952

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80125	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	147.7	7.8e-46	109	264	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec..eaesssssasnsssg... 88 ++kkdrhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt+ WLl+++ ai el + sss+ e+ ea+++ +++ + OMO80125 109 PAKKDRHSKICTAQGVRDRRVRLSIEIAREFFDLQDMLGFDKASKTLGWLLTKSRNAIRELGKMkhgnggslsSSSPDFEMemEADQNIGEVD----Hdeg 205 68*********************************************************99989988776544444444223333333333....1335 PP TCP 89 ..........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 ++ ++ sk+++ +++++l lakesrakarararertrekm++++++ OMO80125 206 velevgtcskSKLADGVvISKEKKLDKETVLVLAKESRAKARARARERTREKMCTRSSS 264 689999998855555556888888899999***********************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MFSSTNNINN VNNPFALLPS SSYHPPGLPP LILTDSNDIF LQNHHDLLPA AAAATSLLPA 60 VAPNPQFTES LINMALLSNA TMSKQIAAAA GGECNFGANS GYGIPVKKPA KKDRHSKICT 120 AQGVRDRRVR LSIEIAREFF DLQDMLGFDK ASKTLGWLLT KSRNAIRELG KMKHGNGGSL 180 SSSSPDFEME MEADQNIGEV DHDEGVELEV GTCSKSKLAD GVVISKEKKL DKETVLVLAK 240 ESRAKARARA RERTREKMCT RSSSTTTNYN THEWKRICPD TSPDQFLNNL RSFSQLEASK 300 KSNHHSCGQN MATTTSFKVN VAQAHQVQEP CLGRQLSSTA PRENNNVIKE SIVIKRKLKP 360 SIILGSQAQA QAQPNLAAAK DIVSCSSSGN NYFPNLPQNW DINGAMAHST IRAITNVNLQ 420 STGIPLKNMD DPFPTFHLTF FLARILHLTS VSNFFSLNFQ EFKYIENPER PEASKLMTTV 480 IMQCMSIKDV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MFSSTNNINN VNNPFALLPS SSYHPPGLPP LILTDSNDIF LQNHHDLLPA AAAATSLLPA  60
VAPNPQFTES LINMALLSNA TMSKQIAAAA GGECNFGANS GYGIPVKKPA KKDRHSKICT  120
AQGVRDRRVR LSIEIAREFF DLQDMLGFDK ASKTLGWLLT KSRNAIRELG KMKHGNGGSL  180
SSSSPDFEME MEADQNIGEV DHDEGVELEV GTCSKSKLAD GVVISKEKKL DKETVLVLAK  240
ESRAKARARA RERTREKMCT RSSSTTTNYN THEWKRICPD TSPDQFLNNL RSFSQLEASK  300
KSNHHSCGQN MATTTSFKVN VAQAHQVQEP CLGRQLSSTA PRENNNVIKE SIVIKRKLKP  360
SIILGSQAQA QAQPNLAAAK DIVSCSSSGN NYFPNLPQNW DINGAMAHST IRAITNVNLQ  420
STGIPLKNMD DPFPTFHLTF FLARILHLTS VSNFFSLNFQ EFKYIENPER PEASKLMTTV  480
IMQCMSIKDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-29	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO80125