PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79907
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 430aa    MW: 47804.1 Da    PI: 7.1163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79907genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.2e-32125229199
               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
               f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l++ 
  OMO79907 125 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGEiGKDRLFID 225
               89***************************966778999*************************************************66699999999999 PP

               EE-S CS
        B3  96 vfrk 99 
               ++r+
  OMO79907 226 WRRR 229
               9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    
MDFGREGFSN EEEQNMGTKG KLPFSYSSSS SPSSSSSQHK TQIAHPLTNS RWEQPAQPLS  60
HQIYDGHHQM SPNWLGNRYE PEEDNEASTE AAAAADDSNN SKRLDSDSSA TAAAAAINIE  120
KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRN GKPWRFRYSY  180
WNSSQSYVMT KGWSRFVKDK KLDAGDIVSF QRGVGEIGKD RLFIDWRRRP DAPDPASFHH  240
QAHHHHHFSL HHHRSIPWSS SLMRPPPGRD HHLINPLSRN SYYGGFPTVG NNVVNPGVFY  300
LRSAAVAAAA PQMGMGMMEW QPQAGGVVEA PIVFDSVPVV QGKAAAKRLR LFGVNMECPI  360
SETSTDECEI LSTTTIANAT PPHHQFSSSS SAQQNPLQLR LYNGTPLPQT TDFLNIANKG  420
KASMSLDLDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-68B3 family protein