PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO79852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28581.1 Da PI: 4.9527 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.6 | 6.8e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+++ r+vt+skRr+ +lKKA+E+SvLCd+e+ +i+fs tg++++y++ OMO79852 9 KMIEDETHREVTLSKRRAELLKKAHEVSVLCDVEIGLILFSRTGEFFDYCT 59 68***********************************************96 PP | |||||||
2 | K-box | 39.5 | 2.4e-14 | 80 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGed..LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++ + lq+ + L+ e++ L+ ++ +l G d L+s ++ eL++LeqqL+ s++k+R++K++ll+ ++ +l + ++++ en++L + +ee OMO79852 80 THGQQGQDLQNMSGMLRTENQLLELSLNNLHGSDdqLNSRKYDELEELEQQLQFSINKVRARKEQLLKLEMGNLERNVEKMEVENNQLWQWIEE 173 67788999****************999999996444****************************************************998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MGRSKIGMKM IEDETHREVT LSKRRAELLK KAHEVSVLCD VEIGLILFSR TGEFFDYCTH 60 HQSMEQIIEK YQLAKGITQT HGQQGQDLQN MSGMLRTENQ LLELSLNNLH GSDDQLNSRK 120 YDELEELEQQ LQFSINKVRA RKEQLLKLEM GNLERNVEKM EVENNQLWQW IEEQQASTRQ 180 QQVTNIDSNV FEQRQQEVLN QFPFLGEEQP ASLLQLVNQN PYRPYLLQPM QSDPQEANFH 240 HNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 3e-31 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO79852 |