PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79815
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 697aa    MW: 77757.3 Da    PI: 6.5581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79815genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24130230198
               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
               f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+v
  OMO79815 130 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGELRVGV 228
               99****************************9555556679************************************************..449999***** PP

               E- CS
        B3  97 fr 98 
               +r
  OMO79815 229 RR 230
               98 PP
2Auxin_resp105.85.1e-35256335183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st++ F v+Y+Pr+  s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W++S+WrsLk
    OMO79815 256 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWKGSNWRSLK 335
                 789***************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MMANRGGSFS QTNNVSSEGN GGDDLYMELW KLCAGPLVEV PRAKERVYYF PQGHMEQLEA  60
STNQELNQRV PLFNLPSKIL CRVVHIQLLA EQETDEVYAQ ITLMPEPNQP EPTTPDASPP  120
ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR VARQQSSMPS  240
SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNKYLEALNN KFAVGMRFKM  300
RFEGEDSPER RFSGTIVGVE DFSPHWKGSN WRSLKVQWDE PASIPRPDRV SPWEIEPFAA  360
PIPPTPAQPV VAKNKRPRPP SEVHSLDLSS TASAPWNSGG MHSHDLARRN VASESKRNEN  420
HVMWHHMQTE MNSTCGSLSK TQNEGSWLSS PGMSVSQHLF SDSREDSKSV SGWPVLSGFS  480
SPQLNNDSTF DPIEKVKKSE TAASCRLFGI ELINHSSSST PLERNPTQLS TMTSSTPEGC  540
GPNTLLPTDS DQKSDISKDS KEKKQEQLQG SAKEIQSRQS SNSTRSRTKV QMQGVAVGRA  600
VDLTMLEGYD QLIDELEEMF DIKGELRPRN KWEIVYTDDE GDMMLVGDDP WLEFCNMVRR  660
IFICSSQDVK KMSTGSKLPM TSIEGEGTVI SSDSAEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein