PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79720
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 318aa    MW: 35275.6 Da    PI: 8.7469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79720genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18114164256
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  OMO79720 114 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 164
               59******9.**********954...5**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MQENNFSLGF DNGAGTSLSQ LILSGGSNTL DSIFSHCAAP ATTTTSASMT ISNNSVFEPL  60
GSSVYLRQRD LLQKFCQESK GNAAVSHNSL TNQLQNYQNP ASTSNYMSPQ KKKLYRGVRQ  120
RHWGKWVAEI RLPQNRMRVW LGTYETAEAA AYAYDRAAYK LRGEYARLNF PNLKDPSKLG  180
FGDIARMNAL KNAVDAKIQA ICQKVKRERA KKNAKKNNPD RSPAAVSSSE TEKEIKVTES  240
SSSCSSLSTA VFSDNLSNEL VSPTTSEDGL WRCENSPSSV LNDYPTMMMM TEEPVFKDCS  300
LARMPSFDPE LIWEILAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.19e-54ERF family protein