PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79438
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 299aa    MW: 33086.6 Da    PI: 4.6139
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79438genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.5e-36281182101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
      OMO79438  28 FLTKTYQLVDDPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRDIQ 115
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
      OMO79438 116 RRK 118
                   *98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MAPLPADQPC ESPASATADS QRSLPTPFLT KTYQLVDDPS VDDLISWNDD GSTFIVWRPA  60
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DCFRRGEKGL LRDIQRRKIT  120
PPAGAGTATA SATVTIAAVS CKVSPSNSGE EQVISSYSPP FATVLQRTTS CTTTPELLEE  180
NERLRKENMQ LSHELTQLKG LCNNILTLMT SYASGQVENN SNLAEGKALD LLPPRNSAGA  240
SEDGGSKETA RVRREDEDEE QQNNNQVQQQ EIEPGSEVKA EPLDGKSDNK DSTWLELGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-84HSF family protein