PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79431
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 677aa    MW: 75355.5 Da    PI: 5.8203
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79431genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.22.1e-1292936621374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               lv+lL +c+ea+ +++  ++++++a+l +lasp+g+ + Rl+ay+teALa r++r +++++++ +p+e + +  +++ +al+l+++vsPi+kf h+t N++
  OMO79431 293 LVHLLAACVEAIGAKNIPAINHYIAKLGDLASPRGSVVSRLIAYYTEALALRVTRLWPHIFHITTPREFD-RVDDDNGTALRLLNQVSPIPKFVHFTSNEM 392
               68*******************************************************************8.5678888999******************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L+vk++E++
  OMO79431 393 MLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHVKERESV 488
               ************************************************....***************************.7******************** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
               aVn+v+qlh++l +    +   +++L l++s++P+vv+++eqea+hn  s+  r++++l yysa+fds++++lp+es  rik+E++ ++rei+n++aceg+
  OMO79431 489 AVNCVFQLHKTLYDGNGGA--LRDFLGLIRSTNPTVVIMAEQEAEHNVFSLEGRVTNSLGYYSAIFDSIDSSLPSESPVRIKIEEM-FAREIRNIIACEGS 586
               ************6554444..589**************************************************************.************** PP

      GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
               +r+erhe++ekWr+ +e+ GF+ + ++e++  q ++ll++++s+ y+v+++      ++++l W d+pL+svSaW+
  OMO79431 587 DRFERHESFEKWRKLMEQGGFRCMGIRERELLQSQMLLKMYSSENYSVDKQgqddgAAAVTLSWLDQPLYSVSAWT 662
               ******************************************999****665554444555**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE ASAQFQACHF QTSMSTQRLD LPCSFSRKDN SSRSQPIRPV  60
GLSVEKPIES KTSGCSLKQN IRLPPLTTSA QNPFEGRREI KDEFWEKGKK SLKRFAEQGL  120
IDESVINRAK RKKGSSDDED SGDIHEGRGD NLSLGQLGAG NFWFQPSFTG QNAPQVPFTL  180
TCSGDEERVC FVPGEVISPP LPPLSNNPWI ESVITEITDV GEKDVETIHR RPAREASGSS  240
TSSESHSLGL RLNEQGTEHE VGNGSGNPYP HEGASLGANE EENNRGEHQG FELVHLLAAC  300
VEAIGAKNIP AINHYIAKLG DLASPRGSVV SRLIAYYTEA LALRVTRLWP HIFHITTPRE  360
FDRVDDDNGT ALRLLNQVSP IPKFVHFTSN EMMLRAFEGK DRVHIIDFDI KQGLQWPSLF  420
QSLASRTNPP SHVRITGIGE SKQELNETGD RLAGFAEALN LPFEFHPVVD RLEDVRLWML  480
HVKERESVAV NCVFQLHKTL YDGNGGALRD FLGLIRSTNP TVVIMAEQEA EHNVFSLEGR  540
VTNSLGYYSA IFDSIDSSLP SESPVRIKIE EMFAREIRNI IACEGSDRFE RHESFEKWRK  600
LMEQGGFRCM GIRERELLQS QMLLKMYSSE NYSVDKQGQD DGAAAVTLSW LDQPLYSVSA  660
WTPVDVAGSS SSFSQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein