PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79368
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 397aa    MW: 44240.7 Da    PI: 4.346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79368genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-194695255
       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  OMO79368 46 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 95
              789******.7*********33....35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MARKRKAGEV VEEKNVSNEQ AMAWDEMVKE AAAAAALGGP RRARKRFVGV RQRPSGRWVA  60
EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT NFWPCSPSSN PSPALSSKIT  120
NLLLQRLKAR NNSCAPLPPS PPINHQPIQQ EEYREETADF LDSKFPDFLN DPEEDYSMAN  180
DNINDDTTAN AAGYLTTSLE SCLTENEDST RRELDCSYTL SDAAQSPSFD DDGEEEAEGH  240
NMGALDFQFV DDIGSSSYFS PFQIAEEIEI PMETETFGDD MKRMTYERKF SASLYAFNGI  300
SELLRRKIGS ENVMGRARSE QLSKLQNACN KNKRAKNVEE DETEMVRKTQ EESPQSSFDS  360
SSSSMDMAMG TSSSSSTGND VESLWSSLDL PPICYVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-22ERF family protein