PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79313

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Dof

Protein Properties

Length: 431aa MW: 46784.8 Da PI: 7.478

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79313	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	6.9e-40	76	136	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss OMO79313 76 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 136 7899******************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MEKEDSLAER TTGSGQEDQY DPSNGEESTN PEISSPDPNV NPKTPSIDEE TGKSKTDKDQ 60 SDADATNSQE KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM 120 RNVPVGAGRR KNKNSSSHYR HITISEALQA AQIDAPNGSH HPALKNNGRV LSFGIDAPIC 180 DSMASVLKLG DRKVVNGTRN GYHSLEEQKL SVPCRDENGD DSASGSSMAV SNSMEEGGRN 240 CIQQTMMGNI NGFPSPIPCL PGVPWPYPWN SAVPPPAFCP PGFPMSFYPA PPYWNCGIPG 300 TWNVPWLSPH SSSSSSNQNG SSSGPNSPTL GKHSREGDIV KVEDSEKEKP PKQKNGSVLV 360 PKTLRIDDPS EAAKSSIWAT LGIKNESRSG GGLFKAFHPK SDEKNHRAEA SPVLKANPAA 420 LSRSLNFHES S

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MEKEDSLAER TTGSGQEDQY DPSNGEESTN PEISSPDPNV NPKTPSIDEE TGKSKTDKDQ  60
SDADATNSQE KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM  120
RNVPVGAGRR KNKNSSSHYR HITISEALQA AQIDAPNGSH HPALKNNGRV LSFGIDAPIC  180
DSMASVLKLG DRKVVNGTRN GYHSLEEQKL SVPCRDENGD DSASGSSMAV SNSMEEGGRN  240
CIQQTMMGNI NGFPSPIPCL PGVPWPYPWN SAVPPPAFCP PGFPMSFYPA PPYWNCGIPG  300
TWNVPWLSPH SSSSSSNQNG SSSGPNSPTL GKHSREGDIV KVEDSEKEKP PKQKNGSVLV  360
PKTLRIDDPS EAAKSSIWAT LGIKNESRSG GGLFKAFHPK SDEKNHRAEA SPVLKANPAA  420
LSRSLNFHES S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-109	Dof family protein

Link Out ? help Back to Top
Ensembl	OMO79313