PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79235

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32490.5 Da PI: 7.0017

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79235	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	80	132	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k OMO79235 80 KKRLNLEQVKALEKSFELGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWK 132 4568889*********************************************9 PP
2	HD-ZIP_I/II	128	3.9e-41	78	168	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe +kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdyeaLk+++d+lk++n++L++++++L +el OMO79235 78 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEALKKQFDSLKADNDALQAQNKKLSAEL 168 69*************************************************************************************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MAFPPHAFMF QSHEDHHHHN LPSPTSLTSL PSCPPPQLFH GGAPFMMKRS VSFSGVDKSH 60 EEVHGDDELS DDGSNLGEKK KRLNLEQVKA LEKSFELGNK LEPERKLQLA KALGLQPRQI 120 AIWFQNRRAR WKTKQLEKDY EALKKQFDSL KADNDALQAQ NKKLSAELLA LKTKDSNEIS 180 IKKENEGSWS NGSDNSCDVN LDISRTAVIT SPAPPSQLSS KHLFPSSLRP ATMTQLLQGS 240 SRPDLQCLKL DHQSVVQEET FCHMFNGVVD EQQGFWPWGT VTEQQNFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01220.1	2e-86	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO79235