PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO79235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 288aa MW: 32490.5 Da PI: 7.0017 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 80 | 132 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k OMO79235 80 KKRLNLEQVKALEKSFELGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWK 132 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128 | 3.9e-41 | 78 | 168 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe +kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdyeaLk+++d+lk++n++L++++++L +el OMO79235 78 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEALKKQFDSLKADNDALQAQNKKLSAEL 168 69*************************************************************************************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence |
MAFPPHAFMF QSHEDHHHHN LPSPTSLTSL PSCPPPQLFH GGAPFMMKRS VSFSGVDKSH 60 EEVHGDDELS DDGSNLGEKK KRLNLEQVKA LEKSFELGNK LEPERKLQLA KALGLQPRQI 120 AIWFQNRRAR WKTKQLEKDY EALKKQFDSL KADNDALQAQ NKKLSAELLA LKTKDSNEIS 180 IKKENEGSWS NGSDNSCDVN LDISRTAVIT SPAPPSQLSS KHLFPSSLRP ATMTQLLQGS 240 SRPDLQCLKL DHQSVVQEET FCHMFNGVVD EQQGFWPWGT VTEQQNFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 135 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01220.1 | 2e-86 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO79235 |