PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79207

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 385aa MW: 43880.9 Da PI: 8.0944

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79207	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.2	1.5e-11	65	121	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g OMO79207 65 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 121 789****************88887784446666.999*************98 PP
2	AP2	52.4	1.3e-16	164	215	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g OMO79207 164 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 215 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MEMMLAKNEQ YQGRRRLCSV DGEVKPVRCV KRRRRDPASV ALGCDDNQGQ QNDQTNTAPT 60 VKRSSRFRGV SRHRWTGRYE AHLWDKLSWN VTQKKKGKQG AYDDEEAAAR AYDLAALKYW 120 GTSTFTNFPI SDYEKEVEIM QSMTKEEYLA SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA 180 RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW LKPGTNNLIA 240 PNETLGMPEP ELVPLTSSYS PRDIESNKPS FCHSFATDYL NSPQKQEVLE TKLPTNSYNK 300 SSSSPTALGL LLRSSIFREL VEKNANINVS EDESTDADDE PKNRQARCDD ELGGLFYDGF 360 SDFPFLCSSG KDSLELQERE NPFIL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MEMMLAKNEQ YQGRRRLCSV DGEVKPVRCV KRRRRDPASV ALGCDDNQGQ QNDQTNTAPT  60
VKRSSRFRGV SRHRWTGRYE AHLWDKLSWN VTQKKKGKQG AYDDEEAAAR AYDLAALKYW  120
GTSTFTNFPI SDYEKEVEIM QSMTKEEYLA SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA  180
RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW LKPGTNNLIA  240
PNETLGMPEP ELVPLTSSYS PRDIESNKPS FCHSFATDYL NSPQKQEVLE TKLPTNSYNK  300
SSSSPTALGL LLRSSIFREL VEKNANINVS EDESTDADDE PKNRQARCDD ELGGLFYDGF  360
SDFPFLCSSG KDSLELQERE NPFIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	35	RRRLCSVDGEVKPVRCVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-75	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO79207