PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78922

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HSF

Protein Properties

Length: 364aa MW: 40222.4 Da PI: 8.1642

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78922	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.7	6e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++i+ OMO78922 25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 112 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ OMO78922 113 RRKTA 117 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ 120 VAINHHHHHH PHSPLGNGPT FFPFASRVSI SPADSDEQAN WCDSPPLSSP RGATGVSVVV 180 GGGGGGGGGG GYNNSSVTAL SEDNERLRRS NNLLMSELAH MRKLYNDIIY FVQNHVKPVA 240 PSNSYSPSLL LCGPPSSAAP VVTTNTSLLQ KPLNQLLGYY PNSTQKQTPQ VQVLNSPTAT 300 SQSSLTILEE PSSNTCKTKL FGVPLQSKKR LHPEYGAPNM ETNKARLVLE KDDLGLNLMP 360 PSRC

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VAINHHHHHH PHSPLGNGPT FFPFASRVSI SPADSDEQAN WCDSPPLSSP RGATGVSVVV  180
GGGGGGGGGG GYNNSSVTAL SEDNERLRRS NNLLMSELAH MRKLYNDIIY FVQNHVKPVA  240
PSNSYSPSLL LCGPPSSAAP VVTTNTSLLQ KPLNQLLGYY PNSTQKQTPQ VQVLNSPTAT  300
SQSSLTILEE PSSNTCKTKL FGVPLQSKKR LHPEYGAPNM ETNKARLVLE KDDLGLNLMP  360
PSRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-118	HSF family protein

Link Out ? help Back to Top
Ensembl	OMO78922