PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78880
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WOX
Protein Properties Length: 223aa    MW: 25696.8 Da    PI: 9.6544
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78880genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.6e-2184143357
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  OMO78880  84 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 143
               7*****************99**************************************97 PP
2Wus_type_Homeobox118.53e-3884145465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
           OMO78880  84 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 145
                        8***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGNMKVHQLA RGLWEHEPSL SLGCKRLRPL APKLHPSSSP DHTSVSSFDL KTFIRPESGP  60
RKLCPSDDKR DSHSRQVETH PGGTRWNPTQ EQIGILEMLY RGGMRTPNAQ QIEQITAQLG  120
KYGKIEGKNV FYWFQNHKAR ERQKQKRNSL GLSHSPRNSA PITTITLDTR GEVMEREEDS  180
PYKRKCRSWS FEYLEEESRS SSSSQEEENR TLELFPLHPE GRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-71WOX family protein