PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78875
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 333aa    MW: 36184 Da    PI: 5.6927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78875genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-16150196455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  OMO78875 150 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 196
               6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MADLYGAAPS SNPEPEEIST FLNQLLHNSS ATSSSSSPCM QFKNKYIHSF PSHAQQFSPA  60
AGNSGSRLAI PVEDRYRLGG SAVRADSEPR VNFSDPETYF GANVNDSTEN ALSSAGDFSY  120
DSETVPEVSE APSNQDRPRS SSKRSRAAEV HNLSEKRRRS RINEKMKALQ NLIPNSNKTD  180
KASMLDEAIE YLKQLQLQVQ MLSMRNGLSL YPMCLPGVLQ PMQLPPTGMA YDEGNGFLSP  240
NTGAGTFSTN EESSMNTTFN LSNPCTMSNQ PIAPPSVANI SNLEASFVFE SSGQAPYGSF  300
SQSTSSKYSS KIFTINLISH FSPSLPVRSN NVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-41bHLH family protein