PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78662

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARR-B

Protein Properties

Length: 1923aa MW: 216604 Da PI: 6.4428

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78662	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	70.9	1.9e-22	801	854	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp+l Wt+ LH+rF++a+e L G ++A Pk+il+ m+v+gL e+v SHLQkYRl OMO78662 801 KPKLIWTEALHNRFLQAIEVL-GFDEAHPKKILQYMNVPGLKKENVSSHLQKYRL 854 79*****************.9*****************************8 PP
2	Myb_DNA-binding	31.5	4.2e-10	804	853	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 + WT+ ++ ++++a++ lG + ++k+I ++m+ g+ +++ s++qky+ OMO78662 804 LIWTEALHNRFLQAIEVLGFDeaHPKKILQYMNvPGLKKENVSSHLQKYR 853 56***********************************************7 PP
3	G2-like	68.2	1.3e-21	1269	1322	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r Wt+eLH++F++a++qL +e+ Pk+ilelm+v+gLt+ ++SHLQkYR OMO78662 1269 KQRFIWTTELHNKFLDAIKQL-EHERILPKKILELMNVPGLTRLVIASHLQKYRK 1322 79*****************.9*****************************6 PP
4	Myb_DNA-binding	33.3	1.1e-10	1274	1321	4	48
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WTte++ +++da+kql + +k+I + m+ g+t+ + s++qky+ OMO78662 1274 WTTELHNKFLDAIKQLEHEriLPKKILELMNvPGLTRLVIASHLQKYR 1321 ***************99**************************7 PP
5	Response_reg	34.8	8.8e-13	643	726	27	109
EEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 27 aeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +a+ +++a ++++++ +Dl+l +p+md +ell++i+e + ++p+i+++a ++ +++l l Ga +l+Kp+ +++l + OMO78662 643 MTAKRATDAFCIIQDRQykIDLVLAEGCLPDMDKYELLETIKELS-EIPVILMSADNDWNTILGGLFKGAVLYLVKPITMDDLKN 726 5788888888899877777**********************99.*********************************9976 PP
6	Response_reg	41	1e-14	1123	1218	7	102
SHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEE CS Response_reg 7 eplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdfls 99 + + +l+++l++ + +v +++++++al+ l+e++ pDl+l+D+emp+ + lellk+ ++e +lp ++ a ++ee +l l+ G + +++ OMO78662 1123 DSTCYTILTTMLQQGHH-RVLHFKSSTDALKALQEEKaiPDLVLMDVEMPDTSRLELLKRVKKEF-QLPATLMAADENEEIVLGGLDHGLSLYFA 1215 55666789999996666.*******************************************99.9*************************9 PP SS- CS Response_reg 100 Kpf 102 K OMO78662 1216 KSL 1218 975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1923 aa Download sequence
MGVGGNFWEL LKPYARQEGF DFLRDKRVAV DLSYWIVQHE TAIKNQATNP HLRLTFFRTI 60 NLISKFGAFP VFILDGIPSP LKSQARIARF FRFSGIDTST LTVVKEGVSK ERNSAFLKYV 120 KDCVELLELM GMPVLKAKGE AEALCAQLNK DGYVDACITA DSDAFLFGAT CVIKCLRPNS 180 KEPIECYRMS DIEAGLGLKR KHLIAISLLV GNDHDLKGVQ GIGLDKALRF VRKFSEDEIL 240 DKLCQIGKGD LPLFQDGIIC MGDVTPCLDD CSPKPKQSHC SFCGHPGSKK SHLKFSCEYC 300 LTDSNVGCLK KSPNFKCNCS SCDKVRKEKD QKKHDNWWIK VCNKITMEPN FPNDEIIEMY 360 MCNNHAMLTV KDTLLAWADP KTELVVDFLA YHQSWQPSYV RQRMLPMLST VYLRETARNP 420 TKTLLVGQYE FHSIQRVKTR YGHQSYVVKW KKAISGELSC PGPVEQSDMQ EEELIEVDDE 480 PNDLLDESID PLIRIDGCWI LTDEAPELVR SAFPEEVVKF MREKEIKEKS RRKASTVRTE 540 GSREMSDLSK PQSVQLNITT FFRSTKTQSQ AKPGEDLAKC SNNPGDGSSK QKREVSSAGL 600 SKASQSCWNI IKVRGCLAKA EDNILHMHEF LFAILYVNEL AFMTAKRATD AFCIIQDRQY 660 KIDLVLAEGC LPDMDKYELL ETIKELSEIP VILMSADNDW NTILGGLFKG AVLYLVKPIT 720 MDDLKNLWQF AFIKERGNMF AAEESIRTEE SSLENASDVH AESQPHISEE RQNHQSTKRE 780 RLEEQENNQD ENNDGSAALK KPKLIWTEAL HNRFLQAIEV LGFDEAHPKK ILQYMNVPGL 840 KKENVSSHLQ KYRLSLKREQ DANKKTMNRG STALHVASHH ILPPFSPQER SLQFSNLQFM 900 TVAGQPVADG LVQENLNCCL PMPSFGSANL LKHVGASTIK FDQQALCNEP LASAYPECNL 960 TGDGITDNEG LVGFPQIGDL ELEQFLEGET DLLNNGDCGL ESLLDCPKVV DNSLQEEQQQ 1020 EEQFVLPGPL QLPPPAKEQE EADVFGTEGG TEFNEVFTME KGTGQLFFDE DFDDFDGFCL 1080 IGDMDASIIC KATFLKYESS VSLESMRTEG SSSAILVLMA NGDSTCYTIL TTMLQQGHHR 1140 VLHFKSSTDA LKALQEEKAI PDLVLMDVEM PDTSRLELLK RVKKEFQLPA TLMAADENEE 1200 IVLGGLDHGL SLYFAKSLSH YSVQRLWQYV LATRKSLLMS GATYGYEGPK REPHLQKVQG 1260 KDGSDLYPKQ RFIWTTELHN KFLDAIKQLE HERILPKKIL ELMNVPGLTR LVIASHLQKY 1320 RKNIQREKQM RLLPWRPKYS FTSSIPSSSS ESDQVYQSST STKSWPYTRM RNLGNKLSFS 1380 GSNQGIDQLR HLKIASSAYK ISNSYNNRSN LGTGRSTTSF TEVPLTGQQG DFRKAGDYYS 1440 GIKNVWLLGN PNVVRRNRAS YIGRSYCKNI SDYYPLRSSN SFPQGRYALP PSLPTSRPLE 1500 QNSDHLLALS RLMESDDILL QPDTDKLNAL YADFSKLIQD QPMNSDHLLA LSRLMENDDI 1560 PEQPDTDKLN ALYADYSKLI QDQPMKLRFR EQFHCLPPIS SFTTGTVPAC NTSAGGRTQT 1620 PSSLIACATK RKQDDDYHAT LKALNSKGRF PRKSLGQHYM LNSEINEQLA SAANVEEGDV 1680 VLEIGPGTGS LTNVLINSGA TVLAIEKDPH MVGLVRERFE STNRFKVLQE DFVKCHIRSH 1740 MFPILESGKA LNPSSTRAKV VSNLPFNIST DVVKLLLPMG DMFSEVVLLL QEETAVRLVE 1800 SSLRTSEYRP INIFVNFYSE PEYKFSVPRT NFFPQPNVDA AVVTFKLKQA PDYPSVASTK 1860 SFFSMVNSAF NGKRKMLRRS LQHICPSDEI ERALGDAGLP TTSRPEELTL DDFVKLHNLI 1920 ARV

Sequence ? help Back to Top

Protein Sequence Length: 1923 aa Download sequence

MGVGGNFWEL LKPYARQEGF DFLRDKRVAV DLSYWIVQHE TAIKNQATNP HLRLTFFRTI  60
NLISKFGAFP VFILDGIPSP LKSQARIARF FRFSGIDTST LTVVKEGVSK ERNSAFLKYV  120
KDCVELLELM GMPVLKAKGE AEALCAQLNK DGYVDACITA DSDAFLFGAT CVIKCLRPNS  180
KEPIECYRMS DIEAGLGLKR KHLIAISLLV GNDHDLKGVQ GIGLDKALRF VRKFSEDEIL  240
DKLCQIGKGD LPLFQDGIIC MGDVTPCLDD CSPKPKQSHC SFCGHPGSKK SHLKFSCEYC  300
LTDSNVGCLK KSPNFKCNCS SCDKVRKEKD QKKHDNWWIK VCNKITMEPN FPNDEIIEMY  360
MCNNHAMLTV KDTLLAWADP KTELVVDFLA YHQSWQPSYV RQRMLPMLST VYLRETARNP  420
TKTLLVGQYE FHSIQRVKTR YGHQSYVVKW KKAISGELSC PGPVEQSDMQ EEELIEVDDE  480
PNDLLDESID PLIRIDGCWI LTDEAPELVR SAFPEEVVKF MREKEIKEKS RRKASTVRTE  540
GSREMSDLSK PQSVQLNITT FFRSTKTQSQ AKPGEDLAKC SNNPGDGSSK QKREVSSAGL  600
SKASQSCWNI IKVRGCLAKA EDNILHMHEF LFAILYVNEL AFMTAKRATD AFCIIQDRQY  660
KIDLVLAEGC LPDMDKYELL ETIKELSEIP VILMSADNDW NTILGGLFKG AVLYLVKPIT  720
MDDLKNLWQF AFIKERGNMF AAEESIRTEE SSLENASDVH AESQPHISEE RQNHQSTKRE  780
RLEEQENNQD ENNDGSAALK KPKLIWTEAL HNRFLQAIEV LGFDEAHPKK ILQYMNVPGL  840
KKENVSSHLQ KYRLSLKREQ DANKKTMNRG STALHVASHH ILPPFSPQER SLQFSNLQFM  900
TVAGQPVADG LVQENLNCCL PMPSFGSANL LKHVGASTIK FDQQALCNEP LASAYPECNL  960
TGDGITDNEG LVGFPQIGDL ELEQFLEGET DLLNNGDCGL ESLLDCPKVV DNSLQEEQQQ  1020
EEQFVLPGPL QLPPPAKEQE EADVFGTEGG TEFNEVFTME KGTGQLFFDE DFDDFDGFCL  1080
IGDMDASIIC KATFLKYESS VSLESMRTEG SSSAILVLMA NGDSTCYTIL TTMLQQGHHR  1140
VLHFKSSTDA LKALQEEKAI PDLVLMDVEM PDTSRLELLK RVKKEFQLPA TLMAADENEE  1200
IVLGGLDHGL SLYFAKSLSH YSVQRLWQYV LATRKSLLMS GATYGYEGPK REPHLQKVQG  1260
KDGSDLYPKQ RFIWTTELHN KFLDAIKQLE HERILPKKIL ELMNVPGLTR LVIASHLQKY  1320
RKNIQREKQM RLLPWRPKYS FTSSIPSSSS ESDQVYQSST STKSWPYTRM RNLGNKLSFS  1380
GSNQGIDQLR HLKIASSAYK ISNSYNNRSN LGTGRSTTSF TEVPLTGQQG DFRKAGDYYS  1440
GIKNVWLLGN PNVVRRNRAS YIGRSYCKNI SDYYPLRSSN SFPQGRYALP PSLPTSRPLE  1500
QNSDHLLALS RLMESDDILL QPDTDKLNAL YADFSKLIQD QPMNSDHLLA LSRLMENDDI  1560
PEQPDTDKLN ALYADYSKLI QDQPMKLRFR EQFHCLPPIS SFTTGTVPAC NTSAGGRTQT  1620
PSSLIACATK RKQDDDYHAT LKALNSKGRF PRKSLGQHYM LNSEINEQLA SAANVEEGDV  1680
VLEIGPGTGS LTNVLINSGA TVLAIEKDPH MVGLVRERFE STNRFKVLQE DFVKCHIRSH  1740
MFPILESGKA LNPSSTRAKV VSNLPFNIST DVVKLLLPMG DMFSEVVLLL QEETAVRLVE  1800
SSLRTSEYRP INIFVNFYSE PEYKFSVPRT NFFPQPNVDA AVVTFKLKQA PDYPSVASTK  1860
SFFSMVNSAF NGKRKMLRRS LQHICPSDEI ERALGDAGLP TTSRPEELTL DDFVKLHNLI  1920
ARV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	8e-41	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OMO78662