PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78642

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 348aa MW: 39148.8 Da PI: 8.4717

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78642	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	44	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l OMO78642 44 KGGWTEEEDKMLTIAVQKFNGKSWKKIAECVP-DRTDVQCLHRWQKVL 90 688***************************.**********986 PP
2	Myb_DNA-binding	57.5	3.2e-18	96	142	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+ ++v++ G+ +W+ Ia++++ gR +kqc++rw ++l OMO78642 96 KGPWSKEEDDLIFELVQKQGKTRWSEIAKYLP-GRIGKQCRERWCNHL 142 79****************************.***********96 PP
3	Myb_DNA-binding	54.7	2.4e-17	148	190	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a+ +G++ W+ Ia+ ++ gRt++++k++w+ OMO78642 148 KSAWTEEEELMLIRAHGTYGNR-WAEIAKLLP-GRTENSIKNHWN 190 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MEEVKDGEGN NNTTSIDDNI NDNEVAKAAS NQGRISGPTR RSTKGGWTEE EDKMLTIAVQ 60 KFNGKSWKKI AECVPDRTDV QCLHRWQKVL NPNLIKGPWS KEEDDLIFEL VQKQGKTRWS 120 EIAKYLPGRI GKQCRERWCN HLNPDIKKSA WTEEEELMLI RAHGTYGNRW AEIAKLLPGR 180 TENSIKNHWN CSVRKKAELL AASGINLGNG QGITSTNPYI AVGNSNSFGD YVRFPFLHER 240 TTEQYGLANK MLSEPQPLLP NAALPGFVER LSNSSVRPQD TNGTGNTEYM ELTGRTPDSF 300 DSDQPVIVNT NSCPESILRN AAKSFRNTPS IIRKRSCQTT RETSSNHN

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MEEVKDGEGN NNTTSIDDNI NDNEVAKAAS NQGRISGPTR RSTKGGWTEE EDKMLTIAVQ  60
KFNGKSWKKI AECVPDRTDV QCLHRWQKVL NPNLIKGPWS KEEDDLIFEL VQKQGKTRWS  120
EIAKYLPGRI GKQCRERWCN HLNPDIKKSA WTEEEELMLI RAHGTYGNRW AEIAKLLPGR  180
TENSIKNHWN CSVRKKAELL AASGINLGNG QGITSTNPYI AVGNSNSFGD YVRFPFLHER  240
TTEQYGLANK MLSEPQPLLP NAALPGFVER LSNSSVRPQD TNGTGNTEYM ELTGRTPDSF  300
DSDQPVIVNT NSCPESILRN AAKSFRNTPS IIRKRSCQTT RETSSNHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	3e-87	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO78642