PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 245aa    MW: 25164.5 Da    PI: 7.815
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78599genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.7e-41321321100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+++
  OMO78599  32 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 132
               7***********************9989********************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MSANPSSSGG SVGGGGGGSC SGSSGGSGGG GPCGACKFLR RKCVPGCIFA PYFDSEQGAA  60
HFAAVHKVFG ASNVSKLLLH IPVHKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQVV  120
NLQAELSYLQ AHLATLELPS PPPPPPASLM APPPLSISDL PSASTVPATY DLSSLFDPMV  180
QPSWPMQQRQ IDPRQFGGGG GSPASGGSGD LQALARELLH RQGSPQHGSL NLPVTDASQS  240
QSLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-79LBD family protein