PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78538
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 597aa    MW: 66396.6 Da    PI: 6.1974
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78538genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.91.7e-1032345962374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               +++L+++Ae +++g+  laq +Larl+++ sp g+p+ R+a+yf+eAL   l    +++ +  ++s+ s++n++ ++ a+k fse+sP+++f+++t+Nqa+
  OMO78538 234 IDQLIQAAELIETGNPVLAQGILARLNHQLSPVGKPFIRAAFYFKEALLLLLRL--NSTNNNTNTSALSTYNMIFKIGAYKSFSEISPVVQFANFTCNQAL 332
               689*********************************************987776..7899999999999******************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvkpgE 200
               le +eg++r+HiiDfdi++G+QW++L+q+L  R+  +g+psl+iT+++sp++++  el  t+++L++fA+e+++ fe++++  ++l++   +  L++ + E
  OMO78538 333 LEVFEGCNRIHIIDFDIGYGGQWASLMQELVLRNngAGAPSLKITAFASPSTHDDLELGFTQDNLKHFATEINMAFEIEIMSLESLNSGsWPLPLHLPETE 433
               **********************************77779*****************************************8666665541356789999** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               a+aVnl ++ ++ +  + +l    + vL++vk+lsPk+vv  ++ +d+++ sF +++++al+ ys l++sl+a    + ++ +k+E++l+++ i+++v+ +
  OMO78538 434 AIAVNLPISSFSNY--PSTL----PMVLRFVKQLSPKIVVSLDRGCDRTDVSFPHHIVHALQSYSGLLESLDAV-NINLDALQKIEKFLVQPGIEKIVMGR 527
               ********888777..4444....55*********************************************766.4677999*****************99 PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +++     e+   Wr+ + ++GF+p+++s+++++qa++l+++++ +g++ve+++ slvl+W++r+L+s+SaWr
  OMO78538 528 QRS----LERTPPWRSLFVQSGFSPLNFSNFTESQAECLVQRTPIRGFHVEKRQSSLVLCWQRRELISASAWR 596
               998....99999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    
MEDWESVLSG SPSQEQSILR LIMGDIEDPS MGLNKILQPG AGSHHQDMEF NAGFGMVDQG  60
FGFDSITSAA TNLVTNIDPP LLGSVSVSTQ TNPVFTSSSP NLLPPPGVFP QHHQQQLQSL  120
DGLDEKPQIF NPQVIINQNQ AQFTQNPAMF LPLSYAQLQE HHLLSPPPPK RLNSGPINYQ  180
VPKVPFSGSG QELYLRRQQQ QLQMLHQQQR PTSGSKPKIV SEELANQQLQ QAIIDQLIQA  240
AELIETGNPV LAQGILARLN HQLSPVGKPF IRAAFYFKEA LLLLLRLNST NNNTNTSALS  300
TYNMIFKIGA YKSFSEISPV VQFANFTCNQ ALLEVFEGCN RIHIIDFDIG YGGQWASLMQ  360
ELVLRNNGAG APSLKITAFA SPSTHDDLEL GFTQDNLKHF ATEINMAFEI EIMSLESLNS  420
GSWPLPLHLP ETEAIAVNLP ISSFSNYPST LPMVLRFVKQ LSPKIVVSLD RGCDRTDVSF  480
PHHIVHALQS YSGLLESLDA VNINLDALQK IEKFLVQPGI EKIVMGRQRS LERTPPWRSL  540
FVQSGFSPLN FSNFTESQAE CLVQRTPIRG FHVEKRQSSL VLCWQRRELI SASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-150GRAS family protein