PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78247

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 1166aa MW: 131671 Da PI: 6.6381

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78247	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41.5	3.7e-13	294	348	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 l++lp + r +a++sl+ eA++r++dPvyG+vg i+ lqq++++++++l+++++e OMO78247 294 LQQLPAHLRAEAADSLYLEAQCRVEDPVYGCVGRISLLQQEIHKAESQLVKTQAE 348 7999**********************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1166 aa Download sequence
MAKISDKELD AVTRRISAVS NHLLPAGSSS NSSSIGLCNA SMNDSYHKIH GEVPSHEVEW 60 KPACDEYGEF TDIIYEKAVG EGIAKITINR PERRNAFRPL TIKELIRAFN DARDDSSIGV 120 IILTGKGTKA FCSGGDQALR KEDGYADFEN FGRLNVLDLQ VQIRRLPKPV IAMVAGYAVG 180 GGHILHMVCD LTIAADNAIF GQTGPKVGSF DAGYGSSIMS RLVGPKKARE MWFLTRFYTA 240 SEADKMGLVN AVVPLEKLEQ ETVKWCREIL RNSPTAIRVL KSALNAVDDG HAGLQQLPAH 300 LRAEAADSLY LEAQCRVEDP VYGCVGRISL LQQEIHKAES QLVKTQAEIA VLKSQAQGHD 360 LQALPFESQS DGLNNFLHEQ YLDNVAAAGL DFSNQEERKA ELYVECALYI DGAPFGLPTK 420 TRLESAGPLY CWNELITLST KYRDLTAHSQ LALTVWDVSC GKDDGLIGGA TILLFNSKMQ 480 LKTGKQKLRL WLGKQADGSF PTTTPGKVPR QERGELERLE KLANKYERGQ IQPVDWLDRL 540 TFKAMEKVKE RESLKNGSSH LYLVVDFCSF EHRVVFQESG ANFLLPSPIA SSNELVIVWD 600 PEVGKINPSE HKQLKLARSL NRGIIDRDLK PSSNERKSIQ RILKYPPTRA LSGDERQLLW 660 KFRFSLMSEK RALTKFLRCV EWSDVQEAKQ AIELMGKWEM IDVCDALELL SPLFESEEVR 720 AYAVSVLERA DDEELQCYLL QLVQALRFER TDKSRLSQFL VQRSLRNIEL ASFLRWFVAV 780 ELHDPAYAKR FYSTYEFLEE NMMKLTAGVN GEEDGFKMWQ SLVRQTELTA QLCSIMRDVR 840 NVRGNTQKKI EKLRQLLSGL LSELTYFDEP IRSPLAPSVL ITGIEPSESS IFKSALHPLR 900 LTFRTANGGN CKIIFKKGDD IRQDQLVVQM VFLMDRLLKL ENLDLHLTPY KVLATGQDEG 960 MLEFIPSRSL AQILSEHRSI ISYLQKFHPD EHGPFGITAT CLETFIKSCA GYSVITYILG 1020 IGDRHLDNLL LRDDGRLFHV DFGFILGRDP KPFPPPMKLC KEMVEAMGGA ESQYYTRFKS 1080 YCCEAYNILR KSSNLILNLF HLMAGSNIPD IASDPEKGIL KLQEKFRLDL DDEACIHFFQ 1140 DLINESVSAL FPQMVETIHR WAQYWR

Sequence ? help Back to Top

Protein Sequence Length: 1166 aa Download sequence

MAKISDKELD AVTRRISAVS NHLLPAGSSS NSSSIGLCNA SMNDSYHKIH GEVPSHEVEW  60
KPACDEYGEF TDIIYEKAVG EGIAKITINR PERRNAFRPL TIKELIRAFN DARDDSSIGV  120
IILTGKGTKA FCSGGDQALR KEDGYADFEN FGRLNVLDLQ VQIRRLPKPV IAMVAGYAVG  180
GGHILHMVCD LTIAADNAIF GQTGPKVGSF DAGYGSSIMS RLVGPKKARE MWFLTRFYTA  240
SEADKMGLVN AVVPLEKLEQ ETVKWCREIL RNSPTAIRVL KSALNAVDDG HAGLQQLPAH  300
LRAEAADSLY LEAQCRVEDP VYGCVGRISL LQQEIHKAES QLVKTQAEIA VLKSQAQGHD  360
LQALPFESQS DGLNNFLHEQ YLDNVAAAGL DFSNQEERKA ELYVECALYI DGAPFGLPTK  420
TRLESAGPLY CWNELITLST KYRDLTAHSQ LALTVWDVSC GKDDGLIGGA TILLFNSKMQ  480
LKTGKQKLRL WLGKQADGSF PTTTPGKVPR QERGELERLE KLANKYERGQ IQPVDWLDRL  540
TFKAMEKVKE RESLKNGSSH LYLVVDFCSF EHRVVFQESG ANFLLPSPIA SSNELVIVWD  600
PEVGKINPSE HKQLKLARSL NRGIIDRDLK PSSNERKSIQ RILKYPPTRA LSGDERQLLW  660
KFRFSLMSEK RALTKFLRCV EWSDVQEAKQ AIELMGKWEM IDVCDALELL SPLFESEEVR  720
AYAVSVLERA DDEELQCYLL QLVQALRFER TDKSRLSQFL VQRSLRNIEL ASFLRWFVAV  780
ELHDPAYAKR FYSTYEFLEE NMMKLTAGVN GEEDGFKMWQ SLVRQTELTA QLCSIMRDVR  840
NVRGNTQKKI EKLRQLLSGL LSELTYFDEP IRSPLAPSVL ITGIEPSESS IFKSALHPLR  900
LTFRTANGGN CKIIFKKGDD IRQDQLVVQM VFLMDRLLKL ENLDLHLTPY KVLATGQDEG  960
MLEFIPSRSL AQILSEHRSI ISYLQKFHPD EHGPFGITAT CLETFIKSCA GYSVITYILG  1020
IGDRHLDNLL LRDDGRLFHV DFGFILGRDP KPFPPPMKLC KEMVEAMGGA ESQYYTRFKS  1080
YCCEAYNILR KSSNLILNLF HLMAGSNIPD IASDPEKGIL KLQEKFRLDL DDEACIHFFQ  1140
DLINESVSAL FPQMVETIHR WAQYWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-20	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO78247