PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78236
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 283aa    MW: 32436.7 Da    PI: 7.6561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78236genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.7e-14996193
              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
        B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
              ffkv  ++++  s+ +++p + +   +g+   s + tl++ ++++ W v+l  ++ +g +++++GW +Fv++n +++gD++vF+++g+s f  +
  OMO78236  9 FFKVYYSHYT--SRTMCIPPNSVVLPKGS--MSAKATLRNsSKNQCWHVEL--KQVGGNMYFERGWTKFVDQNTVNDGDILVFTYVGSSLFDVT 96
              6777744333..44589999998555555..566899999455589*****..99999999*************************98877444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MSNFEAVNFF KVYYSHYTSR TMCIPPNSVV LPKGSMSAKA TLRNSSKNQC WHVELKQVGG  60
NMYFERGWTK FVDQNTVNDG DILVFTYVGS SLFDVTVMGP NGCMKSIFEQ QEEDYCEIQG  120
DDKSEEIQVL ATSNKKTKGC RGKGSGSKNN KGRVEDEDVE LYIARNVNQL NPCFVVKGRK  180
HRDNELYIPS DVTKHYNLNL EDEEEITFID PLGRKMIGKV FKWKDGRICI HGWKTVCVIN  240
RLNSHRDVCI CEFLLHNKEQ QDDDQGQGPT NCIKLHIRRG NQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-22B3 family protein